View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_153 (Length: 316)
Name: NF7829A_low_153
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_153 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 2 - 299
Target Start/End: Original strand, 26303437 - 26303734
Alignment:
| Q |
2 |
tggaggatctagaggttgttgcggcagattacatattgaaagtgggggtgtctaatttcaggaacgcatgggaaagtatggaccctgattctgaacgagt |
101 |
Q |
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| T |
26303437 |
tggaggatctagaggttgttgcggcagattacatattgaaagtgggggtgtctaatttcaggaacgcatgggaaagcatggaccctgattctgaacgagt |
26303536 |
T |
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| Q |
102 |
gggtgaatacggtcttggcccaagggaaggcttgtctgaagctgtaaatactgtcatcactcttcttggcatgcaaccatgtgaggtaagccaatgatgt |
201 |
Q |
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| T |
26303537 |
ggatgaatacggtcttggcccaagggaaggcttgtctgaagctgtaaatactgtcatcactcttcttggcatgcaaccttgtgaggtaagccaatgatgt |
26303636 |
T |
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| Q |
202 |
cagttgtggcttcgtaaatgcttgttgttatgagacccattctattaaactgatcatgagtgttttgcactattattactgcaacatgaggtgatgtc |
299 |
Q |
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| T |
26303637 |
cagttgtggcttcgtaaatgcttgttgttatgagacccattttattaaactgatcatgagtgttttgcactattattactgcaacacgaggtgatgtc |
26303734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 54489152 - 54489342
Alignment:
| Q |
4 |
gaggatctagaggttgttgcggcagattacatattgaaagtgggggtgtctaatttcaggaacgcatgggaaagtatggaccctgattctgaacgagtgg |
103 |
Q |
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|||||||| || ||||| | |||||||||| |||||||||||||| |||||||||||||| ||||||||||| |||| |||||||| ||| ||||||| |
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| T |
54489152 |
gaggatctggaaattgtttcagcagattacacgttgaaagtgggggtatctaatttcaggaatgcatgggaaagcatgggccctgattttgagcgagtgg |
54489251 |
T |
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| Q |
104 |
gtgaatacggtcttggcccaagggaaggcttgtctgaagctgtaaatactgtcatcactcttcttggcatgcaaccatgtgaggtaagcca |
194 |
Q |
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| T |
54489252 |
atgagtatggtcttggcccaagggagagcttggccgaagctgtaaatactgtcatcaaccttcttggcttgcagccctgtgaggtaagcca |
54489342 |
T |
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