View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_155 (Length: 313)

Name: NF7829A_low_155
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_155
NF7829A_low_155
[»] chr7 (26 HSPs)
chr7 (161-313)||(17915649-17915801)
chr7 (209-313)||(8807528-8807629)
chr7 (114-291)||(2278184-2278363)
chr7 (148-249)||(2641637-2641738)
chr7 (172-279)||(19842387-19842494)
chr7 (163-309)||(20053297-20053443)
chr7 (2-79)||(7766826-7766903)
chr7 (2-79)||(11039472-11039549)
chr7 (150-231)||(19142741-19142822)
chr7 (150-231)||(20742140-20742221)
chr7 (2-79)||(23809963-23810040)
chr7 (1-73)||(38440732-38440804)
chr7 (2-77)||(5972746-5972821)
chr7 (152-279)||(48358027-48358153)
chr7 (4-81)||(1053363-1053440)
chr7 (6-79)||(30541766-30541839)
chr7 (156-279)||(17918776-17918898)
chr7 (5-80)||(27336711-27336786)
chr7 (118-159)||(8807490-8807531)
chr7 (2-79)||(33189159-33189236)
chr7 (2-79)||(22519476-22519553)
chr7 (2-73)||(47924755-47924826)
chr7 (4-78)||(2944355-2944429)
chr7 (21-67)||(15954928-15954974)
chr7 (155-255)||(10983675-10983775)
chr7 (17-65)||(31457128-31457176)
[»] chr3 (14 HSPs)
chr3 (170-292)||(21318525-21318647)
chr3 (2-79)||(13825674-13825751)
chr3 (148-291)||(13177777-13177920)
chr3 (148-291)||(13340677-13340820)
chr3 (2-77)||(21287881-21287956)
chr3 (2-80)||(12148798-12148876)
chr3 (148-274)||(15331249-15331374)
chr3 (2-82)||(4127766-4127846)
chr3 (2-79)||(25874992-25875069)
chr3 (2-69)||(5294986-5295053)
chr3 (2-60)||(36584162-36584220)
chr3 (2-78)||(27926909-27926985)
chr3 (148-204)||(9323659-9323715)
chr3 (2-82)||(48251929-48252009)
[»] chr6 (14 HSPs)
chr6 (148-256)||(19731547-19731655)
chr6 (1-79)||(5999307-5999385)
chr6 (2-81)||(10409217-10409296)
chr6 (2-79)||(7622130-7622207)
chr6 (142-291)||(14201350-14201491)
chr6 (2-79)||(32292666-32292743)
chr6 (2-79)||(8576516-8576593)
chr6 (2-79)||(34435084-34435161)
chr6 (157-221)||(10482168-10482232)
chr6 (148-226)||(17209072-17209150)
chr6 (226-280)||(21686950-21687004)
chr6 (2-79)||(28581914-28581991)
chr6 (152-280)||(239786-239912)
chr6 (2-79)||(10788336-10788415)
[»] chr2 (15 HSPs)
chr2 (118-291)||(8685682-8685857)
chr2 (156-309)||(16197361-16197514)
chr2 (2-78)||(45151508-45151584)
chr2 (2-79)||(13807338-13807415)
chr2 (185-279)||(24216080-24216174)
chr2 (207-313)||(25348192-25348298)
chr2 (2-79)||(13626582-13626659)
chr2 (152-280)||(22132173-22132299)
chr2 (118-258)||(16152157-16152299)
chr2 (150-280)||(26653075-26653204)
chr2 (2-80)||(42625299-42625376)
chr2 (2-79)||(5938501-5938578)
chr2 (17-78)||(31604613-31604674)
chr2 (2-77)||(5109974-5110048)
chr2 (31-79)||(5704398-5704446)
[»] chr1 (16 HSPs)
chr1 (153-303)||(9756439-9756590)
chr1 (2-79)||(29678603-29678680)
chr1 (2-80)||(25294208-25294286)
chr1 (2-79)||(47140554-47140631)
chr1 (2-79)||(48379375-48379452)
chr1 (152-280)||(24006169-24006296)
chr1 (2-60)||(19884710-19884768)
chr1 (17-79)||(25987171-25987233)
chr1 (2-78)||(31585516-31585592)
chr1 (5-79)||(2192071-2192145)
chr1 (1-78)||(31293040-31293117)
chr1 (2-79)||(38264606-38264683)
chr1 (2-78)||(17563069-17563145)
chr1 (11-79)||(36729036-36729104)
chr1 (11-78)||(11894077-11894144)
chr1 (155-280)||(19223669-19223792)
[»] scaffold0062 (1 HSPs)
scaffold0062 (150-313)||(2654-2818)
[»] chr4 (17 HSPs)
chr4 (148-276)||(22316639-22316767)
chr4 (148-307)||(5842711-5842871)
chr4 (2-81)||(51356948-51357027)
chr4 (2-60)||(23626621-23626679)
chr4 (2-79)||(41039099-41039176)
chr4 (2-78)||(22278076-22278152)
chr4 (7-78)||(19841513-19841584)
chr4 (2-79)||(8819586-8819663)
chr4 (10-79)||(36465098-36465167)
chr4 (2-78)||(42555097-42555171)
chr4 (2-57)||(24912932-24912987)
chr4 (2-57)||(24916616-24916671)
chr4 (170-280)||(16322148-16322257)
chr4 (2-80)||(40572178-40572254)
chr4 (2-60)||(38951387-38951445)
chr4 (2-60)||(40715150-40715208)
chr4 (22-82)||(17120565-17120625)
[»] chr8 (13 HSPs)
chr8 (118-309)||(23432822-23433017)
chr8 (148-293)||(5826356-5826501)
chr8 (2-79)||(7987511-7987588)
chr8 (148-313)||(5828955-5829126)
chr8 (8-79)||(7968719-7968790)
chr8 (2-77)||(31005782-31005857)
chr8 (193-291)||(18565905-18566003)
chr8 (2-80)||(8227512-8227590)
chr8 (2-79)||(11481199-11481276)
chr8 (152-280)||(13645324-13645450)
chr8 (152-280)||(13745749-13745875)
chr8 (20-79)||(9765287-9765346)
chr8 (2-79)||(36583174-36583251)
[»] chr5 (11 HSPs)
chr5 (150-303)||(21216327-21216481)
chr5 (2-79)||(35188881-35188958)
chr5 (1-79)||(42836747-42836825)
chr5 (2-79)||(3925977-3926054)
chr5 (2-80)||(39800688-39800766)
chr5 (162-311)||(24885122-24885271)
chr5 (2-79)||(39207383-39207460)
chr5 (2-80)||(40056749-40056827)
chr5 (159-282)||(9824308-9824430)
chr5 (2-79)||(23429000-23429077)
chr5 (193-280)||(21391183-21391270)
[»] scaffold0002 (1 HSPs)
scaffold0002 (148-291)||(129068-129211)
[»] scaffold0691 (1 HSPs)
scaffold0691 (2-80)||(7683-7761)
[»] scaffold0115 (1 HSPs)
scaffold0115 (2-80)||(21830-21908)
[»] scaffold0300 (2 HSPs)
scaffold0300 (181-293)||(7454-7566)
scaffold0300 (241-287)||(12232-12278)
[»] scaffold0041 (1 HSPs)
scaffold0041 (152-255)||(26515-26618)
[»] scaffold0711 (1 HSPs)
scaffold0711 (148-255)||(1568-1677)
[»] scaffold0155 (1 HSPs)
scaffold0155 (2-80)||(7161-7238)
[»] scaffold0057 (1 HSPs)
scaffold0057 (5-78)||(66366-66439)
[»] scaffold0527 (2 HSPs)
scaffold0527 (185-280)||(397-492)
scaffold0527 (185-280)||(8460-8555)
[»] scaffold0032 (1 HSPs)
scaffold0032 (185-279)||(79415-79509)


Alignment Details
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 313
Target Start/End: Original strand, 17915649 - 17915801
Alignment:
Q  161 gatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagctt 260  Q
    |||||||| ||||  |||| |||||||||||||||||||||||| |||| |||||||||||||||||  ||||| |||||||||||||||||||||||||    
T  17915649 gatgtcctttgtcgtgttgtacatgtagacagaagaagacaaaagcactactctatcagatactatggcagagacagctcacagaataagacaaaagctt 17915748  T
Q  261 acatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctga 313  Q
    || ||||||||||||||||  |||||||||||| ||||||||| |||||||||    
T  17915749 acgtggattctgggtccctaagatccaagtagctagtcagattatgtgtctga 17915801  T

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Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 209 - 313
Target Start/End: Original strand, 8807528 - 8807629
Alignment:
Q  209 ttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtg 308  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||   ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8807528 ttctctatcagatattatgatagagacagctcacagaataagacaaaag---acatggattctgggtccctctgatccaagtagccagtcagattttgtg 8807624  T
Q  309 tctga 313  Q
    |||||    
T  8807625 tctga 8807629  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 291
Target Start/End: Original strand, 2278184 - 2278363
Alignment:
Q  114 aaagtcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttc 211  Q
    ||||||||||||| |||  ||||| || |||| |  ||||||||||||||| ||||| ||| |||||||| | ||||||||||||||||||||| | |      
T  2278184 aaagtcctttgctgaaaatagaattatttgttgcattctctttgttcttgaggtcctttgtttggttgcaaacgtagacagaagaagacaaaataattga 2278283  T
Q  212 tctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
    | ||||| |||||||||||||| ||||||||| |||||||||||||||||  ||||||||||||||||  ||||||||||    
T  2278284 tttatcatatactatgatagagttagctcacaaaataagacaaaagcttatgtggattctgggtcccttggatccaagta 2278363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 2641738 - 2641637
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||||||||||| ||||||||||||||  || ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||    
T  2641738 tctctttgttcttgatgtcctttgtctggttgcacacataaacagaagaagacaaaagaactgctctatcagatactatgatagagatagctcacagaat 2641639  T
Q  248 aa 249  Q
    ||    
T  2641638 aa 2641637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 279
Target Start/End: Complemental strand, 19842494 - 19842387
Alignment:
Q  172 tctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattct 271  Q
    |||||||| ||| ||||||||||||||||||||  ||| |||||||||||||||||||||| | |  ||||||||||| |||||||||||  ||||||||    
T  19842494 tctggttgtacacgtagacagaagaagacaaaagaactgctctatcagatactatgatagacacaattcacagaataaaacaaaagcttatgtggattct 19842395  T
Q  272 gggtccct 279  Q
    || |||||    
T  19842394 ggctccct 19842387  T

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Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 163 - 309
Target Start/End: Original strand, 20053297 - 20053443
Alignment:
Q  163 tgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttac 262  Q
    |||||| |||||||||| ||| ||  |  |||||||||||||  ||| || |||||||| |||||||||||||| |||||| ||||| | || ||||||     
T  20053297 tgtcctttgtctggttgaacacgtttatggaagaagacaaaagaactgctatatcagatgctatgatagagataactcacaaaataataaaatagcttat 20053396  T
Q  263 atggattctgggtccctctgatccaagtagcaagtcagattttgtgt 309  Q
     |||||| |||||||||  |||||||||||| ||||| |||||||||    
T  20053397 gtggattatgggtcccttagatccaagtagccagtcaaattttgtgt 20053443  T

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Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 7766826 - 7766903
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||| ||||||||| |||||||||||||   |||||||||||||||||||||||||||| |||||| |||||||||||    
T  7766826 atatacatggatgcggatagtgtgatattcatgtccgctccgttggataaatatgaaatatgtatcttatccatatcc 7766903  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 11039549 - 11039472
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||||||| | ||||||  |||||| |||||||||||||||||||||| |||| | |||||||||||    
T  11039549 atatccatggatgcagataatatgatatccgtgtccactccgttggataaatatgaaatttgtaccatatccatatcc 11039472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 19142822 - 19142741
Alignment:
Q  150 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatag 231  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||  ||| || ||||||||||||| ||||    
T  19142822 tctttgttcttgaggtcctttgtctgtttgcacacgtagacagaagaagacaaaagaactactttatcagatactattatag 19142741  T

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Target: chr7; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 150 - 231
Target Start/End: Complemental strand, 20742221 - 20742140
Alignment:
Q  150 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatag 231  Q
    ||||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||  ||| || ||||||||||||| ||||    
T  20742221 tctttgttcttgaggtcctttgtctgtttgcacacgtagacagaagaagacaaaagaactactttatcagatactattatag 20742140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 23810040 - 23809963
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| ||||||| |||||  |||||| ||||||| ||||||||||||||| ||| |||||||||||||    
T  23810040 atatccatggatgcggatagtgcgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcc 23809963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 38440804 - 38440732
Alignment:
Q  1 aatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatcc 73  Q
    ||||||||||||||| |||||||||||||  ||||||||| |||||||||||||||||||  ||||| |||||    
T  38440804 aatatccatggatgcggatagtgtgatattcgtgtccgcttcgttggataaatatgaaattcgtatcatatcc 38440732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 5972746 - 5972821
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 77  Q
    ||||||||| |||| |||||||||||||  ||||| |||||||| ||||||||||||||| ||| |||||||||||    
T  5972746 atatccatgaatgcggatagtgtgatatccgtgtctgctccgttagataaatatgaaatccgtaccctatccatat 5972821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 152 - 279
Target Start/End: Complemental strand, 48358153 - 48358027
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    |||||| |||| ||||| ||| || ||||||| ||||||||||||||||||||  | |  ||||||| |||||||||||| ||||  || ||||||||||    
T  48358153 tttgttattgaggtcctttgtatgtttgcacacgtagacagaagaagacaaaagaattgttctatcacatactatgatagggataattcccagaataaga 48358054  T
Q  252 caaaagcttacatggattctgggtccct 279  Q
    | ||||  || |||||||||||||||||    
T  48358053 c-aaagtatatatggattctgggtccct 48358027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 4 - 81
Target Start/End: Complemental strand, 1053440 - 1053363
Alignment:
Q  4 atccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccac 81  Q
    ||||||||||||||||||||||||||  ||||||||||| || || |||||||||||||||  | ||| |||||||||    
T  1053440 atccatggatgcagatagtgtgatatccgtgtccgctccattagacaaatatgaaatctgtgccttattcatatccac 1053363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 30541839 - 30541766
Alignment:
Q  6 ccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||| |||||| ||||||  || ||||||||||||||| ||||||||||| ||| |||||||||||||    
T  30541839 ccatggatgcggatagtatgatattcgtatccgctccgttggattaatatgaaatccgtaccctatccatatcc 30541766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 279
Target Start/End: Original strand, 17918776 - 17918898
Alignment:
Q  156 ttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaa 255  Q
    ||||||| ||| | |||||| ||||||| ||||||||||||||| ||||  | | ||||||| ||||||||||||| || |  |||||  ||||||| ||    
T  17918776 ttcttgaggtcatttgtctgtttgcacacgtagacagaagaagataaaagaaatgctctatcggatactatgatagggacaattcacatgataagac-aa 17918874  T
Q  256 agcttacatggattctgggtccct 279  Q
    ||||||  ||||||||||||||||    
T  17918875 agcttatgtggattctgggtccct 17918898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 27336711 - 27336786
Alignment:
Q  5 tccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||||||||||||||  |||||| || |||| |||||||||||||||   | ||||||||||||||    
T  27336711 tccatggatgcagatagtgtgatatccgtgtccacttcgttagataaatatgaaatccagaccctatccatatcca 27336786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 8807490 - 8807531
Alignment:
Q  118 tcctttgctaaaataagaatgatgtgtttctctctttgttct 159  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  8807490 tcctttgctaaaataagaatgatgtgtctctctctttgttct 8807531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 33189159 - 33189236
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||| ||||||||||||||| ||||||  |||||| ||||||| |||||||||||||| |||  |||||| ||||||    
T  33189159 atatctatggatgcagatagtttgatatccgtgtccactccgtttgataaatatgaaatatgtgccctatcaatatcc 33189236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 22519553 - 22519476
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||| | |||||||| |||| | |||| |||| ||||||||| ||||||||| ||| ||||||| |||||    
T  22519553 atatccatggatacggatagtgtaatatttttgtctgctcggttggataattatgaaatccgtaccctatccgtatcc 22519476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 47924755 - 47924826
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatcc 73  Q
    |||| |||||||| ||||||| | ||||| ||||||| | | |||||||||||||||||| ||| |||||||    
T  47924755 atattcatggatgtagatagtctaatatacgtgtccgtttcattggataaatatgaaatccgtaccctatcc 47924826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 2944429 - 2944355
Alignment:
Q  4 atccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    |||||||||||  ||| |||||||||  |||||||||| |||| |||| ||||||| ||||| ||||| ||||||    
T  2944429 atccatggatgtggatggtgtgatatccgtgtccgctctgttgtataagtatgaaaactgtaccctattcatatc 2944355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 15954974 - 15954928
Alignment:
Q  21 gtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatc 67  Q
    ||||||||| |||||||| |||||||||||||||| |||| ||||||    
T  15954974 gtgtgatatctgtgtccgttccgttggataaatataaaatttgtatc 15954928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 10983775 - 10983675
Alignment:
Q  155 gttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaa 254  Q
    |||||||||||||| ||| |||||| ||| |||||||| |||||||| ||  | |  |||| |||||  ||||||||||| || || |||||||| ||||    
T  10983775 gttcttgatgtcctttgtgtggttgtacacgtagacagtagaagacagaagaattgttctaccagatgttatgatagagacagttcgcagaataaaacaa 10983676  T
Q  255 a 255  Q
    |    
T  10983675 a 10983675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31457128 - 31457176
Alignment:
Q  17 gatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgta 65  Q
    ||||||||||||| |||||||| |  |||||||||||||||||| ||||    
T  31457128 gatagtgtgatatttgtgtccgttttgttggataaatatgaaatatgta 31457176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 170 - 292
Target Start/End: Original strand, 21318525 - 21318647
Alignment:
Q  170 tgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggatt 269  Q
    |||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  21318525 tgtctggttgcacacgtagacagaagaagacaaaagcactactctatcagatactatgatagagataactcacagaataagacaaaagcttacgtggatt 21318624  T
Q  270 ctgggtccctctgatccaagtag 292  Q
    || ||| ||||| ||||||||||    
T  21318625 ctaggttcctctaatccaagtag 21318647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 13825674 - 13825751
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  13825674 atatccatggatgcggatagtgtgatatatgtgtccgctccgttagataaatatgaaatccgtaccctatccatatcc 13825751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 13177920 - 13177777
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||  ||| |||||||| |||||| | || ||| ||||||||| ||    
T  13177920 tctctttgttcttgaggtcatttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcaaatactacggtatagacagctcacagtat 13177821  T
Q  248 aagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
     ||||||||  |||| || |||  ||||||||| ||||||||||    
T  13177820 tagacaaaaatttacgtgcatttcgggtccctcagatccaagta 13177777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 291
Target Start/End: Complemental strand, 13340820 - 13340677
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||| | ||||| ||||| |||||||| ||||||||||||||||||||  ||| ||||||||||||||| | || ||| ||||||||  ||    
T  13340820 tctctttgttcttaaggtcctttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcagatactacggtatagacagctcacaatat 13340721  T
Q  248 aagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
     ||||||||  |||| || |||  ||||||||| ||||||||||    
T  13340720 tagacaaaaatttacctgcatttcgggtccctcagatccaagta 13340677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 21287881 - 21287956
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 77  Q
    |||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||| |||||||||||    
T  21287881 atatccatggatgcagatagtgtgatatctgtgtcccctccgttagataaatatgaaatccgtaccctatccatat 21287956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 12148798 - 12148876
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  12148798 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcca 12148876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 148 - 274
Target Start/End: Complemental strand, 15331374 - 15331249
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||||| ||||| ||| || ||||||||||||||| ||||||| ||||| ||| ||||||||||||| ||||||| || |  ||||| ||     
T  15331374 tctctttgttcttgaggtcctttgtttgtttgcacatgtagacaaaagaagagaaaataactgctctatcagatacaatgatagggacaattcacaaaac 15331275  T
Q  248 aagacaaaagcttacatggattctggg 274  Q
    || |||||| ||||| |||||||||||    
T  15331274 aaaacaaaa-cttacgtggattctggg 15331249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 4127766 - 4127846
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccacg 82  Q
    |||||||||||||| |||||||||||||  ||||||| |||||||||||||||||||||| | | ||||||||||| ||||    
T  4127766 atatccatggatgcggatagtgtgatatccgtgtccgttccgttggataaatatgaaatccgaaccctatccatattcacg 4127846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 25875069 - 25874992
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||| ||||||||  |||||||||||||  |||||||||||||| |||||| |||||||| ||| |||||||||||||    
T  25875069 atatacatggatgtggatagtgtgatatccgtgtccgctccgttagataaagatgaaatccgtaccctatccatatcc 25874992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 69
Target Start/End: Original strand, 5294986 - 5295053
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcct 69  Q
    |||| ||||||||| |||||||||||||  |||||| ||||||| |||||||||||||||| ||||||    
T  5294986 atattcatggatgcggatagtgtgatatccgtgtcccctccgttagataaatatgaaatctatatcct 5295053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 36584162 - 36584220
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 60  Q
    ||||||||||||||||||||| |||||| ||| || ||||| |||||||||||||||||    
T  36584162 atatccatggatgcagatagtatgatatctgtatctgctccattggataaatatgaaat 36584220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 27926985 - 27926909
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    |||| |||||||| ||||||||| ||||  |||||||||||||| |||||||||||||| ||||  ||||| |||||    
T  27926985 atattcatggatgtagatagtgtcatatccgtgtccgctccgttagataaatatgaaatatgtactctatctatatc 27926909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 9323659 - 9323715
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaa 204  Q
    ||||||||||||||| ||| | ||| || ||||||| ||||||||||||||||||||    
T  9323659 tctctttgttcttgaggtcatttgtttgtttgcacacgtagacagaagaagacaaaa 9323715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 48252009 - 48251929
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccacg 82  Q
    ||||||||| |||  |||||||||||||   | |||| |||||||||||||||||||||  ||| |||||| |||||||||    
T  48252009 atatccatgaatgtggatagtgtgatatccatatccgttccgttggataaatatgaaattcgtaccctatcgatatccacg 48251929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 7e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 148 - 256
Target Start/End: Original strand, 19731547 - 19731655
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  19731547 tctctttgttcttgatgtcctttgtctggttgcacacgtagacagaagaagacaaaataactgctctatcagatactatgatagagatagctcacagaat 19731646  T
Q  248 aagacaaaa 256  Q
     ||||||||    
T  19731647 gagacaaaa 19731655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 5999307 - 5999385
Alignment:
Q  1 aatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||| |||||||||||||  |||||||||||||| ||||||||||||||| ||| |||||||||||||    
T  5999307 aatatccatggatgcggatagtgtgatatccgtgtccgctccgttagataaatatgaaatccgtaccctatccatatcc 5999385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 10409296 - 10409217
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccac 81  Q
    |||| ||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||| ||| |||||||||||||||    
T  10409296 atattcatggatgatgatagtgtgatatatgtgttcgctccgttggataaatataaaatccgtaccctatccatatccac 10409217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 7622130 - 7622207
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||  ||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| | |||||||||||    
T  7622130 atatccacagatgcagatagtgtgatatctgtgtccgttccgttgaataaatatgaaatctgtaccttatccatatcc 7622207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 142 - 291
Target Start/End: Original strand, 14201350 - 14201491
Alignment:
Q  142 tgtttctctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctca 241  Q
    |||| ||||||| |||| ||||||||| |||||||| | ||| ||||||||||||||||||        ||||||||||||| |||||||||| |  |||    
T  14201350 tgttgctctcttcgttcctgatgtcctttgtctggtagtacacgtagacagaagaagacaa--------ctctatcagataccatgatagagacatatca 14201441  T
Q  242 cagaataagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
    ||||||| ||||||||||||| || ||| || ||||||| |||| |||||    
T  14201442 cagaatatgacaaaagcttacgtgaattatgagtccctcagatcaaagta 14201491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 32292743 - 32292666
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||| |||||||| |||||| ||||||  ||||||||||||||||||||||||||||||  || |||||||||||||    
T  32292743 atatcgatggatgcggatagtatgatatccgtgtccgctccgttggataaatatgaaatccataccctatccatatcc 32292666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 8576516 - 8576593
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||||||  ||||||| ||||||  |||||||||||||| |||  ||||||||||||    
T  8576516 atatccatggatgcggatagtgtgatatccgtgtccgttccgttaaataaatatgaaatccgtactctatccatatcc 8576593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 34435161 - 34435084
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||| ||||||||| |||||||||||||  || |||||||| || |||||||||||||||| || |||||| ||||||    
T  34435161 atattcatggatgcggatagtgtgatatccgtatccgctccattagataaatatgaaatctctaccctatctatatcc 34435084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 10482168 - 10482232
Alignment:
Q  157 tcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagat 221  Q
    |||||| ||||| |||||| ||||||| ||||||||||||||| ||||| ||| |||||||||||    
T  10482168 tcttgaggtcctttgtctgtttgcacacgtagacagaagaagataaaataactgctctatcagat 10482232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 148 - 226
Target Start/End: Original strand, 17209072 - 17209150
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactat 226  Q
    |||| |||||||||| || || |||||| ||||| | ||||| ||||||||||||||  |||||||||| |||||||||    
T  17209072 tctcattgttcttgaggtgctttgtctgtttgcagacgtagatagaagaagacaaaagaacttctctattagatactat 17209150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 21687004 - 21686950
Alignment:
Q  226 tgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 280  Q
    |||| |||| ||||||||||||||||||||||| ||| |||||| ||||||||||    
T  21687004 tgattgagacagctcacagaataagacaaaagcatacgtggattttgggtccctc 21686950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 28581914 - 28581991
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||  |||||||||||||   |||| |||||||| |||||||||||||||  || ||||| |||||||    
T  28581914 atatccatggatgtggatagtgtgatatccatgtctgctccgttagataaatatgaaatccataccctattcatatcc 28581991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 239912 - 239786
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    |||| |||||| ||||| |||||  ||||||| ||||||||||||||||||||  | | ||||| ||||| || |||||| || || ||||| || || |    
T  239912 tttgctcttgaggtcct-tgtctatttgcacacgtagacagaagaagacaaaaaaattcctctagcagatcctttgatagggacagttcacaaaagaata 239814  T
Q  252 caaaagcttacatggattctgggtccctc 280  Q
    ||||| | ||| |||||||||||||||||    
T  239813 caaaatc-tacgtggattctgggtccctc 239786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 10788336 - 10788415
Alignment:
Q  2 atatccatggatgcagatagtgtgatata--tgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||| |||| |||| |||||||||||||   ||||||||||||||| |||||| ||||||||  || |||||||||||||    
T  10788336 atattcatgtatgcggatagtgtgatatccgtgtgtccgctccgttagataaacatgaaatccataccctatccatatcc 10788415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 291
Target Start/End: Original strand, 8685682 - 8685857
Alignment:
Q  118 tcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctcta 215  Q
    ||||||||||||| |||||| || |||| |  ||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||||  |||||||||    
T  8685682 tcctttgctaaaagaagaattatttgttacattctctttgttcttgaggtcctttgtctgtttgcacatgtagacagaataagacaaaaaaacttctcta 8685781  T
Q  216 tcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
    | ||||||||||||||||| | |||||| |||||||||||||||||| | |||||  ||||||||  |||||||||    
T  8685782 ttagatactatgatagagaaaactcacataataagacaaaagcttacgtagattcctggtccctcatatccaagta 8685857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 156 - 309
Target Start/End: Complemental strand, 16197514 - 16197361
Alignment:
Q  156 ttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaa 255  Q
    ||||||||||||| ||||| |||| | | ||||||||||| ||||||||  ||| |||||||||||| |||||||| || | | |||| ||||||| |||    
T  16197514 ttcttgatgtcctttgtctagttgtatacgtagacagaaggagacaaaagaactgctctatcagatattatgatagtgacaacacacaaaataagataaa 16197415  T
Q  256 agcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtgt 309  Q
    || ||||||||||| || ||||||| |||||||||| | ||||||||| |||||    
T  16197414 agtttacatggattatgagtccctcagatccaagtacccagtcagattctgtgt 16197361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 45151584 - 45151508
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    ||||||||| |||| |||||||||||||  |||||||||| ||| ||||||||||||||||||||||||| ||||||    
T  45151584 atatccatgcatgcggatagtgtgatatccgtgtccgctctgttagataaatatgaaatctgtatcctattcatatc 45151508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 13807338 - 13807415
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||| || ||||||||||||| |||||||||  |||| || |||||||||||| |||||||||||||||||    
T  13807338 atatccatggacgcggatagtgtgatatctgtgtccgcctcgttagaaaaatatgaaatccgtatcctatccatatcc 13807415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 24216080 - 24216174
Alignment:
Q  185 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccct 279  Q
    |||||||||||||||||||||   | |||| | |||| |  ||||||||| | |||| |||||||||||||||||||| ||||||||||||||||    
T  24216080 gtagacagaagaagacaaaatagttgctctgttagatgcactgatagagacaactcatagaataagacaaaagcttacgtggattctgggtccct 24216174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 313
Target Start/End: Original strand, 25348192 - 25348298
Alignment:
Q  207 acttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttg 306  Q
    ||||||||| ||||| |||||||||||| | |||||||||||| |||||| ||||| |||||||| |||||||  ||||||| || |  |||| ||||||    
T  25348192 acttctctaccagatgctatgatagagacaactcacagaataacacaaaatcttacgtggattctaggtccctgagatccaattatcctgtcaaattttg 25348291  T
Q  307 tgtctga 313  Q
     ||||||    
T  25348292 cgtctga 25348298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 13626659 - 13626582
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||| ||||| |||||||||||||  ||||||| | |||| ||||||||||||||| ||| |||||||||||||    
T  13626659 atatccatagatgcggatagtgtgatattcgtgtccgtttcgttagataaatatgaaatccgtaccctatccatatcc 13626582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 22132299 - 22132173
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||||||||||||  ||| |||||||| || || |||||| || || ||||  || ||||    
T  22132299 tttgttcttgaggtcctttgtctgtttgcacacgtagacagaagaagacaaaa-aactgctctatcatatcctttgatagggacagttcactaaagaaga 22132201  T
Q  252 caaaagcttacatggattctgggtccctc 280  Q
     |||| | ||| |||||||||||||||||    
T  22132200 -aaaaacctacgtggattctgggtccctc 22132173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 258
Target Start/End: Complemental strand, 16152299 - 16152157
Alignment:
Q  118 tcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctcta 215  Q
    ||||||||| ||| |||||| || |||| |  ||| ||||||||||| ||| | ||||||||| |||   |||| ||||| | ||||||  ||| |||||    
T  16152299 tcctttgctgaaagaagaattatatgttgcattctttttgttcttgaagtcttatgtctggtttcacgcatagatagaagtatacaaaagaactactcta 16152200  T
Q  216 tcagatactatgatagagatagctcacagaataagacaaaagc 258  Q
    ||||||||||||||||||| |  ||| ||||||||||||||||    
T  16152199 tcagatactatgatagagacaaatcaaagaataagacaaaagc 16152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 280
Target Start/End: Complemental strand, 26653204 - 26653075
Alignment:
Q  150 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataa 249  Q
    ||||||||||||| ||||| ||| || ||||||| |||||||||||||| || ||  ||| ||||||| ||||| |||||||||| ||  | || || ||    
T  26653204 tctttgttcttgaggtcctttgtttgtttgcacacgtagacagaagaaggcataagaactgctctatctgatacgatgatagagacagtgcccataagaa 26653105  T
Q  250 gacaaaagcttacatggattctgggtccctc 280  Q
    || |||| | |||||||||| ||||||||||    
T  26653104 gaaaaaatc-tacatggattttgggtccctc 26653075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 42625376 - 42625299
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| || ||||||||||  |||||| ||| ||| ||||||||||||||| ||| ||||||||||||||    
T  42625376 atatccatggatgcggagagtgtgatatccgtgtccactc-gttagataaatatgaaatccgtaccctatccatatcca 42625299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 5938501 - 5938578
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||   ||||||||||||  |||||| ||||||| ||||||||||||||  ||| |||||||||||||    
T  5938501 atatccatggatgtgaatagtgtgatatccgtgtccactccgttagataaatatgaaattcgtaccctatccatatcc 5938578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 31604613 - 31604674
Alignment:
Q  17 gatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    ||||||||||||| |||||| ||||||||||||||||||||||| |||| | |||| |||||    
T  31604613 gatagtgtgatatttgtgtctgctccgttggataaatatgaaatttgtaccttatctatatc 31604674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 5109974 - 5110048
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 77  Q
    ||||||||| |||| ||||||||||||| ||||| ||||| ||  ||||||||||||||| |||| ||||||||||    
T  5109974 atatccatg-atgcggatagtgtgatatttgtgtgcgctctgtcagataaatatgaaatccgtattctatccatat 5110048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 5704398 - 5704446
Alignment:
Q  31 tgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||| || |||||||||||||||||||  ||||| ||||||    
T  5704398 tgtgtccgctccattagataaatatgaaatctgtactctatctatatcc 5704446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 6e-40; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 153 - 303
Target Start/End: Complemental strand, 9756590 - 9756439
Alignment:
Q  153 ttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagac 252  Q
    |||||||||||||||  |||||| ||| |||  ||||||||| |||||||||| |||||||||||||||||||| ||||||| | |||||||||||||||    
T  9756590 ttgttcttgatgtccgttgtctgtttgtacacatagacagaaaaagacaaaataacttctctatcagatactattatagagacaactcacagaataagac 9756491  T
Q  253 aaaagcttacatggattctgggtccctctgatccaagtag-caagtcagatt 303  Q
    |||||||||| |||| ||||||||||||  |||||||||| |||||||||||    
T  9756490 aaaagcttacgtggaatctgggtccctcgtatccaagtagccaagtcagatt 9756439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 29678680 - 29678603
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  29678680 atatccattgatgcagatagtatgatatatgtgtccgctccgttggataaatatgaaatccataccctatccatatcc 29678603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 25294286 - 25294208
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  25294286 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatctgtaccctatccatatcca 25294208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 47140554 - 47140631
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||  |||| |||| ||||||    
T  47140554 atatccatggatgcggatagtgtgatattcgtgtccgctccgttggataaatatgaaatccatatcttatctatatcc 47140631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 48379452 - 48379375
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||| ||  |||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  48379452 atatccatggatgcggatagtgtgaaatccgtgtccgctccgttagataaatatgaaatccgtaccatatccatatcc 48379375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 280
Target Start/End: Complemental strand, 24006296 - 24006169
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    ||||||||||| ||||| |||||  ||  ||| ||||||| ||||||||||||| ||| |||||||||||||||||||||| || | ||||| || |||     
T  24006296 tttgttcttgaggtcctttgtctttttcgacacgtagacataagaagacaaaataactgctctatcagatactatgatagatatggttcacataagaag- 24006198  T
Q  252 caaaagcttacatggattctgggtccctc 280  Q
     |||| | || ||||||||||||||||||    
T  24006197 gaaaaacctatatggattctgggtccctc 24006169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 19884768 - 19884710
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 60  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  19884768 atattcatggatgcggatagtgtgatatctgtgtccgctccgttggacaaatatgaaat 19884710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 25987171 - 25987233
Alignment:
Q  17 gatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||||||| ||||| |||||||| |||||| |||||||||||    
T  25987171 gatagtgtgatatacgtgtccgctccgttagataagtatgaaatatgtatcttatccatatcc 25987233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 31585592 - 31585516
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    |||||||||||||| |||||||| ||||   ||||||||||||| ||||||||| ||||| ||| ||||||||||||    
T  31585592 atatccatggatgcggatagtgtaatatccttgtccgctccgttagataaatataaaatccgtaccctatccatatc 31585516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 2192145 - 2192071
Alignment:
Q  5 tccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||| |||| ||||||||  ||||||||||| || || ||||||||||||| | ||||||||||||||    
T  2192145 tccatggatgcggataatgtgatatccgtgtccgctccattagacaaatatgaaatctatgtcctatccatatcc 2192071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 31293117 - 31293040
Alignment:
Q  1 aatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    |||||| |||||||| |||| |||||||| | | ||||||||||| ||||||||||||||| | | ||||||||||||    
T  31293117 aatatctatggatgcggataatgtgatatttatatccgctccgttagataaatatgaaatccgcagcctatccatatc 31293040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 38264683 - 38264606
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||| ||||||| | |||| ||||||||||||||||| |||||| || |||||||||||| ||  |||||||||||||    
T  38264683 atattcatggatacggatactgtgatatatgtgtccgttccgttagacaaatatgaaatccgtgccctatccatatcc 38264606  T

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Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 17563145 - 17563069
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    |||||||||||||| |||||||| |||| | ||||||||| ||| ||||||||| |||||  || ||||||||||||    
T  17563145 atatccatggatgcggatagtgtaatatctttgtccgctctgttagataaatataaaatccataccctatccatatc 17563069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 36729104 - 36729036
Alignment:
Q  11 gatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||| |||||||||||||  ||||||| |||||||||||||||||||||  ||| |||||| ||||||    
T  36729104 gatgcggatagtgtgatatccgtgtccgatccgttggataaatatgaaattcgtaccctatcaatatcc 36729036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 11894077 - 11894144
Alignment:
Q  11 gatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    ||||| |||||||| |||| |||||| | ||| |||||||||||||||||||||| | ||| ||||||    
T  11894077 gatgcggatagtgtaatatttgtgtctgttccattggataaatatgaaatctgtaccatattcatatc 11894144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 280
Target Start/End: Complemental strand, 19223792 - 19223669
Alignment:
Q  155 gttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaa 254  Q
    |||| ||||||||| ||||  || | ||| |||||| |||||||||||||  | | ||||||||||| |  |||| || | | |||||||||||||||      
T  19223792 gttcctgatgtcctttgtcctgtcgtacacgtagacggaagaagacaaaagaattgctctatcagatgcactgattgacaaaactcacagaataagac-- 19223695  T
Q  255 aagcttacatggattctgggtccctc 280  Q
    |||||||| |||||||| ||||||||    
T  19223694 aagcttacgtggattctaggtccctc 19223669  T

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Target: scaffold0062 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 150 - 313
Target Start/End: Original strand, 2654 - 2818
Alignment:
Q  150 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataa 249  Q
    ||||||||||||||||||| | ||| ||||||||  |||||||||||||||||||  ||| |||||||||||||||||||||||| | ||||||| ||||    
T  2654 tctttgttcttgatgtcctttttcttgttgcacacatagacagaagaagacaaaagaactactctatcagatactatgatagagacaactcacagtataa 2753  T
Q  250 gacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgtctga 313  Q
    ||||||||||||  || ||| ||||||||||  ||||||||| |||||||||||| | |||||||    
T  2754 gacaaaagcttatgtgaattatgggtccctcatatccaagtatgcaagtcagattctatgtctga 2818  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 148 - 276
Target Start/End: Complemental strand, 22316767 - 22316639
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||||| ||| | |||||||||||||| ||| | ||||||||||||||  ||| ||||||||| |||||||||||||| | ||||||||||    
T  22316767 tctctttgttcttgaggtcttttgtctggttgcacacgtacatagaagaagacaaaagaactgctctatcagttactatgatagagacaactcacagaat 22316668  T
Q  248 aagacaaaagcttacatggattctgggtc 276  Q
    ||||||||||||||| |||||||||||||    
T  22316667 aagacaaaagcttacgtggattctgggtc 22316639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 148 - 307
Target Start/End: Complemental strand, 5842871 - 5842711
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||| ||||||| | | |||||||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||||| | |||||| |||    
T  5842871 tctctttgttcttaatgtcctttatttggttgcacacgtagacataagaagacaaaagaactgctctatcagatactatgatagagacaactcacataat 5842772  T
Q  248 aagacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgt 307  Q
    |||| ||||| |||  | |||||||||||| || ||| |||||| || |||||||||||||    
T  5842771 aagataaaagattatgtagattctgggtccttcagattcaagtatgccagtcagattttgt 5842711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 81
Target Start/End: Original strand, 51356948 - 51357027
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccac 81  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||| |||  |||||||||||||||    
T  51356948 atatccatggatgcggatagtgtgatatctgtgtccgctccgttggacaaatatgaaatttgtgccctatccatatccac 51357027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 23626621 - 23626679
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 60  Q
    ||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||    
T  23626621 atatccatggatgcaaatagtgtgatatttgtgtccgctccgtcggataaatatgaaat 23626679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 41039099 - 41039176
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||| ||||||||  |||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  41039099 atatccatggatgcggataatgtgatatccgtgtccgctccgttagataaatatgaaatccgtaccatatccatatcc 41039176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 22278076 - 22278152
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    ||||||||||||| ||||| | ||||||  ||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  22278076 atatccatggatgtagatattatgatatccgtgtccgttccgttggataaatatgaaatccgtaccctatcaatatc 22278152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 78
Target Start/End: Original strand, 19841513 - 19841584
Alignment:
Q  7 catggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    ||||||||| ||||||||||||| | ||||||||| || |||||||||||||||| ||| |||||| |||||    
T  19841513 catggatgcggatagtgtgatatctatgtccgctctgtcggataaatatgaaatccgtaccctatcgatatc 19841584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 8819663 - 8819586
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||||||  | |||| |||||||||| |||||||||||  ||  |||||||||||||    
T  8819663 atatccatggatgcggatagtgtgatattcgcgtccactccgttggacaaatatgaaattcgttccctatccatatcc 8819586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 36465167 - 36465098
Alignment:
Q  10 ggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||| ||||||||||||| ||| |||||||||||||| ||||||||||||  | | ||||||||||||    
T  36465167 ggatgcggatagtgtgatatttgtatccgctccgttggacaaatatgaaatcaatgttctatccatatcc 36465098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 78
Target Start/End: Original strand, 42555097 - 42555171
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    |||||||||||||| ||||||||||| ||| |  |||||||||| |||||||||||||| ||||  |||||||||||    
T  42555097 atatccatggatgcggatagtgtgatgtatat--ccgctccgtttgataaatatgaaatttgtactctatccatatc 42555171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 24912932 - 24912987
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatga 57  Q
    ||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||    
T  24912932 atatccatggacgcatatagtatgatatatgtgtccacttcgttggataaatatga 24912987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 24916616 - 24916671
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatga 57  Q
    ||||||||||| ||||||||| ||||||  ||||||||| ||||||||||||||||    
T  24916616 atatccatggacgcagatagtatgatatccgtgtccgcttcgttggataaatatga 24916671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 170 - 280
Target Start/End: Complemental strand, 16322257 - 16322148
Alignment:
Q  170 tgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggatt 269  Q
    |||||| ||||||| |||| || ||||| ||||||  ||| || ||| || ||||||||||| || || ||| |||||||||| ||||| ||| ||||||    
T  16322257 tgtctgtttgcacacgtaggcaaaagaaaacaaaagaactgctatattaggtactatgatagggacagttcatagaataagac-aaagcctacgtggatt 16322159  T
Q  270 ctgggtccctc 280  Q
    |||||||||||    
T  16322158 ctgggtccctc 16322148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 40572254 - 40572178
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||  |||||||||||||  |||||| ||||||| ||||||| |||||  | || ||||||||||||||    
T  40572254 atatccatggatgtggatagtgtgatattcgtgtccactccgttagataaatgtgaaa--tttaccctatccatatcca 40572178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 38951387 - 38951445
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 60  Q
    |||||||||||||| || ||||||||||  ||||||| |||||| ||||||||| ||||    
T  38951387 atatccatggatgcggagagtgtgatattcgtgtccgttccgttagataaatataaaat 38951445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 40715208 - 40715150
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaat 60  Q
    ||||||| ||||||||||||||||||||  ||||| | ||||||| |||| ||||||||    
T  40715208 atatccaaggatgcagatagtgtgatattcgtgtctgatccgttgaataagtatgaaat 40715150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 17120625 - 17120565
Alignment:
Q  22 tgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatccacg 82  Q
    ||||||||||||||| | ||| ||||| ||||||||||| |||| | ||| ||||||||||    
T  17120625 tgtgatatatgtgtctgttccattggacaaatatgaaatttgtaccatattcatatccacg 17120565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 309
Target Start/End: Complemental strand, 23433017 - 23432822
Alignment:
Q  118 tcctttgctaaaataagaatgatgtgtttc--tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatca-cttctct 214  Q
    ||||||||||||| |||||  || |||| |  ||||||||||||||| ||||| |||||  || ||||||||||||||| |||||||||  | || ||||    
T  23433017 tcctttgctaaaagaagaactatctgttgcattctctttgttcttgaggtcctttgtctattttcacatgtagacagaaaaagacaaaaaaaactgctct 23432918  T
Q  215 atcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagattttgtgt 309  Q
    |||||||||||||||||||  | ||||||||||||||||||||||||| | |||||  |||||||| |||||||||| || ||||||||| |||||    
T  23432917 atcagatactatgatagaggcaactcacagaataagacaaaagcttacgtagattcctggtccctcagatccaagtatgccagtcagattctgtgt 23432822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 148 - 293
Target Start/End: Original strand, 5826356 - 5826501
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    |||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||| || | |||||||||||| ||||||||  | | |||||| |||    
T  5826356 tctcttcgttcttgatgtcctttgtctggttgcacacgtagatagaaaaagacaaaagcattgctctatcagatattatgatagtaacaactcacataat 5826455  T
Q  248 aagacaaaagcttacatggattctgggtccctctgatccaagtagc 293  Q
    ||||||||| ||||| || |||||| ||| ||| ||||||||||||    
T  5826456 aagacaaaatcttacgtgaattctgagtctctcagatccaagtagc 5826501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 7987588 - 7987511
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7987588 atatccatggatgcagatattgtgatatctgtgtccgctccgttggataaatatgaaatccgtaccctatccatatcc 7987511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 313
Target Start/End: Original strand, 5828955 - 5829126
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatag------agatagctca 241  Q
    |||||| |||||||||||||| |||||||||||||| ||||| |||| ||||||||| || | |||||||||||| ||||||||        | | ||||    
T  5828955 tctcttcgttcttgatgtcctttgtctggttgcacacgtagatagaaaaagacaaaagcattgctctatcagatattatgatagcaacaactacaactca 5829054  T
Q  242 cagaataagacaaaagcttacatggattctgggtccctctgatccaagtagcaagtcagattttgtgtctga 313  Q
    || |||||||||||||||||| || |||||| ||| ||| |||||||||||| || || ||| |||||||||    
T  5829055 cataataagacaaaagcttacgtgaattctgagtctctcagatccaagtagctagccaaattctgtgtctga 5829126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 7968790 - 7968719
Alignment:
Q  8 atggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||| |||||||||||||    
T  7968790 atggatgcagatagtgtgatatccgtgtccgctccgttggataaatatgaaatccgtaccctatccatatcc 7968719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 31005782 - 31005857
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatat 77  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||| |||||||||||| ||  |||||||||||    
T  31005782 atatccatggatgcagatagtgtgatatccgtgtccgctccgttggacaaatatgaaatccgtgccctatccatat 31005857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 291
Target Start/End: Original strand, 18565905 - 18566003
Alignment:
Q  193 aagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
    ||||||||||||  |||||| ||||||||| |||||||||||   |||||| |||||||||||||  ||| ||||||||||||||||| ||||||||||    
T  18565905 aagaagacaaaagaacttctttatcagataatatgatagagacctctcacaaaataagacaaaagtctacgtggattctgggtccctcagatccaagta 18566003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 8227590 - 8227512
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||  |||||||||||||  |||||||||||||| ||||||||||||||| |||  |||||||||||||    
T  8227590 atatccatggatgtggatagtgtgatatccgtgtccgctccgttagataaatatgaaatccgtactctatccatatcca 8227512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 11481199 - 11481276
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||| ||||| ||||||||||||| ||||||||||||  | ||||||||||||||  |||||||||||||||||    
T  11481199 atatccatagatgcggatagtgtgatatttgtgtccgctccaatagataaatatgaaattcgtatcctatccatatcc 11481276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 13645324 - 13645450
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    ||||||||||| || || |||||| ||||||| || |||||||||||||||||  ||| ||||||||||||||||||||| || |  |||||||| ||||    
T  13645324 tttgttcttgaggttctttgtctgtttgcacacgtggacagaagaagacaaaa-aactactctatcagatactatgatagggagaattcacagaagaaga 13645422  T
Q  252 caaaagcttacatggattctgggtccctc 280  Q
    | ||| | ||| ||||||||||| |||||    
T  13645423 c-aaatcctacgtggattctgggaccctc 13645450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 152 - 280
Target Start/End: Original strand, 13745749 - 13745875
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    ||||||||||| || || |||||| ||||||| || |||||||||||||||||  ||| ||||||||||||||||||||| || |  |||||||| ||||    
T  13745749 tttgttcttgaggttctttgtctgtttgcacacgtggacagaagaagacaaaa-aactactctatcagatactatgatagggagaattcacagaagaaga 13745847  T
Q  252 caaaagcttacatggattctgggtccctc 280  Q
    | ||| | ||| ||||||||||| |||||    
T  13745848 c-aaatcctacgtggattctgggaccctc 13745875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 9765346 - 9765287
Alignment:
Q  20 agtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||||||||| |||| ||||||||| ||||| ||| |||||||||||||    
T  9765346 agtgtgatatatgtgtccgcttcgttagataaatattaaatccgtaccctatccatatcc 9765287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 36583251 - 36583174
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||  ||||| ||||||  ||||||| |||||| ||||||||||||||| ||| ||||| |||||||    
T  36583251 atatccatggatgcgtatagtatgatatccgtgtccgttccgttagataaatatgaaatccgtaccctattcatatcc 36583174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 150 - 303
Target Start/End: Complemental strand, 21216481 - 21216327
Alignment:
Q  150 tctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataa 249  Q
    ||||||||||||| ||||| |||||| |||||||  |||||||||||||||||||| |||  ||||||||||||||||| ||| | | || | | |||||    
T  21216481 tctttgttcttgaggtcctttgtctgtttgcacacatagacagaagaagacaaaataactgatctatcagatactatgacagatacaacttataaaataa 21216382  T
Q  250 gacaaaagcttacatggattctgggtccctctgatccaagta-gcaagtcagatt 303  Q
    |||||| |||||| | |||| |||||||||| |||||||||| ||||||||||||    
T  21216381 gacaaaggcttacgttgattttgggtccctcggatccaagtatgcaagtcagatt 21216327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 35188958 - 35188881
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||||||  |||||||||||||| |||||||||||||||||||||||||| ||||||    
T  35188958 atatccatggatgcggatagtgtgatattcgtgtccgctccgttagataaatatgaaatctgtatcctatctatatcc 35188881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 42836747 - 42836825
Alignment:
Q  1 aatatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||| |||| | |||||||||||    
T  42836747 aatatccatggatgcggatagtgtgatatctgtgtccgctccgttagataaatatgaaatatgtaccatatccatatcc 42836825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 3925977 - 3926054
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||| ||| | |||||||||||    
T  3925977 atatccatggatgtggatagtgtgatatttgtgtccgctccgttagataaatatgaaatccgtaccatatccatatcc 3926054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 39800766 - 39800688
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||| ||||| ||| ||||||||||||||    
T  39800766 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatataaaatccgtaccctatccatatcca 39800688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 24885271 - 24885122
Alignment:
Q  162 atgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagctta 261  Q
    ||||||| |||| ||||| |||  || ||| ||||||||||||  ||| |||||  |||| |||||||||| | | |||||| |||||||||||||||||    
T  24885271 atgtcctttgtccggttgtacacataaacaaaagaagacaaaagaactgctctactagatgctatgatagaaaaaactcacataataagacaaaagctta 24885172  T
Q  262 catggattctgggtccctctgatccaagtagcaagtcagattttgtgtct 311  Q
      |||||||| |||||||  ||| ||||||||  |||||||| |||||||    
T  24885171 tgtggattctaggtcccttagattcaagtagcctgtcagattctgtgtct 24885122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 39207460 - 39207383
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||||||||||||| |||||||||||||  ||||| |||||||| ||||||||||||||| ||| ||| |||||||||    
T  39207460 atatccatggatgcggatagtgtgatatccgtgtctgctccgttagataaatatgaaatccgtaccctttccatatcc 39207383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 40056749 - 40056827
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| |||||||||||||  || ||| ||||||| ||||||||||||||  ||| ||||||||||||||    
T  40056749 atatccatggatgcggatagtgtgatatccgtttccactccgttagataaatatgaaattcgtaccctatccatatcca 40056827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 159 - 282
Target Start/End: Original strand, 9824308 - 9824430
Alignment:
Q  159 ttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagc 258  Q
    |||| ||||| |||||| ||||| | ||||| ||| ||||||||||  ||| ||||||||||||||| ||||| || |  ||||| |||||||  || ||    
T  9824308 ttgaggtcctttgtctgtttgcatacgtagagagaggaagacaaaagaactgctctatcagatactaagatagggacaattcacataataaga-taaggc 9824406  T
Q  259 ttacatggattctgggtccctctg 282  Q
     |||||||||||||||||||||||    
T  9824407 ctacatggattctgggtccctctg 9824430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 23429000 - 23429077
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcc 79  Q
    |||| ||||||||| |||||||||||||   |||| |||||| | ||||||||||||||| ||| |||||||||||||    
T  23429000 atattcatggatgcggatagtgtgatatccttgtctgctccgatagataaatatgaaatccgtaccctatccatatcc 23429077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 21391270 - 21391183
Alignment:
Q  193 aagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 280  Q
    ||||||||||||| | | ||||| |||||    ||||||||| | |||||||||||||||||||| |||||||||||  |||||||||    
T  21391270 aagaagacaaaataattgctctaccagatttagtgatagagacaactcacagaataagacaaaagtttacatggattacgggtccctc 21391183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 148 - 291
Target Start/End: Original strand, 129068 - 129211
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaat 247  Q
    ||||||||||||||| ||| | ||||| |||||||| ||||||||||||||||||||  ||| |||||||| |||||| | || ||| ||||||||| ||    
T  129068 tctctttgttcttgaggtcatttgtctagttgcacacgtagacagaagaagacaaaagaactcctctatcaaatactacggtatagacagctcacagtat 129167  T
Q  248 aagacaaaagcttacatggattctgggtccctctgatccaagta 291  Q
     ||||||||  |||| || |||  ||||||||| ||||||||||    
T  129168 tagacaaaaatttacgtgcatttcgggtccctcagatccaagta 129211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 7683 - 7761
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  7683 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcca 7761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 21830 - 21908
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||| |||||||||||||  |||||| ||||||| ||||||||||||||| ||| ||||||||||||||    
T  21830 atatccatggatgcggatagtgtgatatccgtgtccactccgttagataaatatgaaatccgtaccctatccatatcca 21908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 181 - 293
Target Start/End: Original strand, 7454 - 7566
Alignment:
Q  181 acatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 280  Q
    |||||||||| ||| |||||||||| ||| ||||| | |||  | ||||||||| | ||||||||||||||||||| ||||| |||||||| ||||||||    
T  7454 acatgtagacggaaaaagacaaaataactgctctaccggatggtctgatagagacaactcacagaataagacaaaaacttacgtggattctaggtccctc 7553  T
Q  281 tgatccaagtagc 293  Q
     |||||| |||||    
T  7554 agatccatgtagc 7566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 12232 - 12278
Alignment:
Q  241 acagaataagacaaaagcttacatggattctgggtccctctgatcca 287  Q
    |||||||||||||||||||||| |||||| |||||||||| ||||||    
T  12232 acagaataagacaaaagcttacgtggattttgggtccctcagatcca 12278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 255
Target Start/End: Original strand, 26515 - 26618
Alignment:
Q  152 tttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataaga 251  Q
    ||||||||||| || || |||||| ||||||| ||||| ||||||||||||||| ||| |||||| | |||||| ||||| ||||  |||||||||||||    
T  26515 tttgttcttgaggtactttgtctgtttgcacacgtagatagaagaagacaaaataactgctctataacatactacgatagggataattcacagaataaga 26614  T
Q  252 caaa 255  Q
    ||||    
T  26615 caaa 26618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 148 - 255
Target Start/End: Complemental strand, 1677 - 1568
Alignment:
Q  148 tctctttgttcttgatgtcctctgtctggttgcacatgtagacagaagaagacaaaatcacttctctatcagatactatg--atagagatagctcacaga 245  Q
    ||||||||||||||| || || ||| || ||||||| ||||||| |||||||||||   ||| |||||||||||||||||  |||| ||||| ||||| |    
T  1677 tctctttgttcttgaggttctttgtttgtttgcacacgtagacaaaagaagacaaacaaactactctatcagatactatgatatagggatagttcacata 1578  T
Q  246 ataagacaaa 255  Q
    ||||||||||    
T  1577 ataagacaaa 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 7238 - 7161
Alignment:
Q  2 atatccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatcca 80  Q
    |||||||||||||||||||||||||||| ||| |||||| |||| ||||||||||||||  ||| |||||| |||||||    
T  7238 atatccatggatgcagatagtgtgatatctgtatccgct-cgttagataaatatgaaattcgtaccctatctatatcca 7161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 66366 - 66439
Alignment:
Q  5 tccatggatgcagatagtgtgatatatgtgtccgctccgttggataaatatgaaatctgtatcctatccatatc 78  Q
    ||||||||||| ||||||||||||| |||||| ||||| ||||| ||||||||||||||   ||||||||||||    
T  66366 tccatggatgcggatagtgtgatatttgtgtcagctccattggacaaatatgaaatctgagccctatccatatc 66439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 492 - 397
Alignment:
Q  185 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 280  Q
    |||||||||||||||||||||  || ||||  ||||| |  | ||||||| |||| ||||||||||||||||  |||| |||||||| ||||||||    
T  492 gtagacagaagaagacaaaatagctgctctgccagatgcagttatagagacagcttacagaataagacaaaatgttacgtggattctaggtccctc 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 8555 - 8460
Alignment:
Q  185 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccctc 280  Q
    |||||||||||||||||||||  || ||||  ||||| |  | ||||||| |||| ||||||||||||||||  |||| |||||||| ||||||||    
T  8555 gtagacagaagaagacaaaatagctgctctgccagatgcagttatagagacagcttacagaataagacaaaatgttacgtggattctaggtccctc 8460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 79415 - 79509
Alignment:
Q  185 gtagacagaagaagacaaaatcacttctctatcagatactatgatagagatagctcacagaataagacaaaagcttacatggattctgggtccct 279  Q
    |||||||||||||||||||||   |  |||| ||||| | |||||||||| |  | ||| ||||||| |||||||||| |||||||| |||||||    
T  79415 gtagacagaagaagacaaaatagttgttctaccagatgcaatgatagagacaattaacataataagagaaaagcttacgtggattctaggtccct 79509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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