View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_159 (Length: 309)

Name: NF7829A_low_159
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_159
NF7829A_low_159
[»] chr2 (1 HSPs)
chr2 (17-309)||(24069470-24069763)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 17 - 309
Target Start/End: Complemental strand, 24069763 - 24069470
Alignment:
Q  17 acatcattccacaaccctcgaaataccgttacccctactccttcnnnnnnnnnnnnn--taccgttaccccttacaaagcagttctttttataatcttct 114  Q
    ||||||||||||||||||| ||||||||||||||||||||||||               ||||||||||||| |||||||||||||||||||||||||||    
T  24069763 acatcattccacaaccctcaaaataccgttacccctactccttcaaaaaaaaaaaaaaataccgttacccct-acaaagcagttctttttataatcttct 24069665  T
Q  115 ccaaattctctttcgttgtcacaaaacaattcacaattcccaaataatcaaatttaataatcaacnnnnnnntgttccgcataagcaacacattggttgg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||||||||||||||||||||||||    
T  24069664 ccaaattctctttcgttgtcacaaaacaattcacaattcccaaataaacaaatttaataatcaacaaaaaaatgttccgcataagcaacacattggttgg 24069565  T
Q  215 aaccctaaacattctaaccttactgctttcactcgctggcatggctggttctgcatacattcacttccacaaaaccgactgccttaaagtgttga 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||    
T  24069564 aaccctaaacattctaaccttactgctttcactcgctggcatggctggttctgcatacatccacttccataaaacagactgccttaaagtgttga 24069470  T

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