View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_164 (Length: 307)
Name: NF7829A_low_164
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_164 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 32 - 307
Target Start/End: Original strand, 7309764 - 7310031
Alignment:
| Q |
32 |
ctcataaatagcaatggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagttccaataagctgcaatatttttcttca |
131 |
Q |
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| T |
7309764 |
ctcataaatagcaatggagttttagctcgggtgaaaataggctctataaaattagtacaataaacaaacaagttccaaaaagctgcaatattttgcttca |
7309863 |
T |
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| Q |
132 |
taacattctgccgccatgttccatcattcatgcttgtcgcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaat |
231 |
Q |
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| T |
7309864 |
tagcattctgccgccatgttccatcattcat-------gcttgatgtgtttgaagctcaggttgtagatctacaattcaaaatgaaccaatttcaacaat |
7309956 |
T |
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| Q |
232 |
agagcgaaattcaaagacgnnnnnnntaggacagaaaaacagtaaataatgtgaagagtttcattattctcaagat |
307 |
Q |
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| T |
7309957 |
agagcgaaattcaaagacg-gtaaaataggacagaaacacagtaaatcatgtgaagtgtttcattattctcaagat |
7310031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 7330181 - 7330063
Alignment:
| Q |
46 |
tggagttttagctcgggtgaaaataggctctgtaaaattagtacaataaacaaacaagtt------ccaataagctgcaatatttttcttcataacattc |
139 |
Q |
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| T |
7330181 |
tggagttttagctcgggtgaaaatagactat--aaaatgagtacaataaccaaacaagttgtagttccaataagctccaatatttttcttcatagcattc |
7330084 |
T |
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| Q |
140 |
tgccgccatgttccatcattc |
160 |
Q |
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| T |
7330083 |
cgcagccatgctccatcattc |
7330063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 7330056 - 7330012
Alignment:
| Q |
188 |
tcaggttgtagatctacaattcaaaatgaaccaatttcaacaata |
232 |
Q |
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| T |
7330056 |
tcaggttgtagatctacaattcaaaatgaacccatttaaacaata |
7330012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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