View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_165 (Length: 307)

Name: NF7829A_low_165
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_165
NF7829A_low_165
[»] chr7 (19 HSPs)
chr7 (1-288)||(22884843-22885139)
chr7 (137-260)||(22887484-22887607)
chr7 (2-87)||(22804786-22804871)
chr7 (124-260)||(22803520-22803657)
chr7 (124-260)||(22870018-22870155)
chr7 (2-87)||(22825708-22825793)
chr7 (2-87)||(22857888-22857973)
chr7 (2-87)||(22875378-22875463)
chr7 (4-87)||(22888748-22888831)
chr7 (2-87)||(22814477-22814562)
chr7 (2-87)||(22839502-22839587)
chr7 (2-87)||(22893403-22893488)
chr7 (1-87)||(22897719-22897805)
chr7 (2-87)||(22809070-22809155)
chr7 (2-83)||(22830485-22830566)
chr7 (4-87)||(22880042-22880125)
chr7 (172-260)||(22829223-22829312)
chr7 (5-87)||(22913118-22913200)
chr7 (172-215)||(22874164-22874208)
[»] chr1 (2 HSPs)
chr1 (2-87)||(21151179-21151264)
chr1 (138-230)||(21152349-21152442)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 22885139 - 22884843
Alignment:
Q  1 tcatagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagttctgattttgcat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22885139 tcatagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagttctgattttgcat 22885040  T
Q  101 atacttt-----gttcaagttttatctattgagtagatcta----agagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaaga 191  Q
    |||||||     || ||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22885039 atactttactttgtccaagttttatctattgagtagatctatctaagagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaaga 22884940  T
Q  192 aataacctgcaaaccttcaaatgcgatgaggcaaccactaaataacttcagaaatcctatttgtgctaagctctttattttttctcctgcactggtt 288  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22884939 aataacctgcaaaccttcaaatgcgataaggcaaccactaaataacttcaaaaatcctatttgtgctaagctctttattttttctcctgcactggtt 22884843  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 137 - 260
Target Start/End: Complemental strand, 22887607 - 22887484
Alignment:
Q  137 agagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaagaaataacctgcaaaccttcaaatgcgatgaggcaaccactaaataa 236  Q
    |||||||||| ||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||||| | |||||||| || |||||||||||||||||    
T  22887607 agagactacaattattgttcagtaatatcacagagattcaaagggtaaactaagaaataacctgcaaaacctcaaatgcaataaggcaaccactaaataa 22887508  T
Q  237 cttcagaaatcctatttgtgctaa 260  Q
    ||||||||||  ||||||| ||||    
T  22887507 cttcagaaattatatttgttctaa 22887484  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22804871 - 22804786
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  22804871 catagatttaagttcaaagatctatactttgccacaaagggtttcagggaaaaggggctattgggagttggtggatttggtagagt 22804786  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 22803657 - 22803520
Alignment:
Q  124 ttgagtagatctaagagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaagaaataacctg-caaaccttcaaatgcgatgagg 222  Q
    ||||||||||  | ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||  |||| ||||||||| || |      
T  22803657 ttgagtagatgaacgagactacaattattattcagtaatatcatagagattcaaagggtaaacaaagaaataacctgaaaaactttcaaatgcaataaac 22803558  T
Q  223 caaccactaaataacttcagaaatcctatttgtgctaa 260  Q
    ||||||||||||| |||||||||| || ||||||||||    
T  22803557 caaccactaaatatcttcagaaattctgtttgtgctaa 22803520  T

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Target: chr7; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 124 - 260
Target Start/End: Complemental strand, 22870155 - 22870018
Alignment:
Q  124 ttgagtagatctaagagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaagaaataacctg-caaaccttcaaatgcgatgagg 222  Q
    ||||||||||  | ||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||  |||| ||||||||| || |      
T  22870155 ttgagtagatgaacgagactacaattattattcagtaatatcatagagattcaaagggtaaacaaagaaataacctgaaaaactttcaaatgcaataaac 22870056  T
Q  223 caaccactaaataacttcagaaatcctatttgtgctaa 260  Q
    ||||||||||||| |||||||||| || ||||||||||    
T  22870055 caaccactaaatatcttcagaaattctgtttgtgctaa 22870018  T

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Target: chr7; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22825793 - 22825708
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||| ||| |||||||||||||||||||||    
T  22825793 catagatttaagttcaaagatctatactttgctacaaagggtttcagggaaaacgagctactgggagttggtggatttggtagagt 22825708  T

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Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22857973 - 22857888
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  22857973 catagatttaagttcaaagatatatactttgccacaaagggtttcatggtaaaggggctgttgggagttggtggatttggtagagt 22857888  T

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Target: chr7; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22875463 - 22875378
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    ||||||||||||||||||||||||||||  || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  22875463 catagatttaagttcaaagatctatactcagccacaaagggtttcagggaaaaggggctattgggagttggtggatttggtagagt 22875378  T

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Target: chr7; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 22888831 - 22888748
Alignment:
Q  4 tagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    ||||||||||||||||||||||||||  || ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  22888831 tagatttaagttcaaagatctatactcagccacaaagggtttcagggaaaaggggctattgggagttggtggatttggtagagt 22888748  T

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Target: chr7; HSP #10
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22814562 - 22814477
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| |||||| |||||| ||| |||||||||||||||||||||    
T  22814562 catagatttaagttcaaagatctatactttgccacaaaggggttcagggaaaaagggctactgggagttggtggatttggtagagt 22814477  T

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Target: chr7; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22839587 - 22839502
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||||||||||||||||||||||||| ||| || |||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  22839587 catagatttaagttcaaagatctatactctgccacgaagggtttcagggaaaaggggctactgggagttggtggatttggtagagt 22839502  T

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Target: chr7; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22893488 - 22893403
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  22893488 catagatttaagttcaaagatttgtactttgccacaaagggtttcagggaaaaggggctactgggagttggtggatttggtagagt 22893403  T

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Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 22897805 - 22897719
Alignment:
Q  1 tcatagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||| ||||||||||||||| | |||||||| ||||||||||||| ||||||||| ||||| | |||||||||||||||||||||    
T  22897805 tcataggtttaagttcaaagatttgtactttgccacaaagggtttcaaggaaaagggtctattaggagttggtggatttggtagagt 22897719  T

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Target: chr7; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 87
Target Start/End: Complemental strand, 22809155 - 22809070
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||  ||||||||| ||| | | |||||||||||||||||||||    
T  22809155 catagatttaagttcaaagatctatattttgctacaaaaggtttcggggaaaagggtctactaggagttggtggatttggtagagt 22809070  T

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Target: chr7; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 22830566 - 22830485
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggta 83  Q
    |||||||||||||||||||||||||||| ||| || |||||||||| |||||||||| || ||| |||||||||||||||||    
T  22830566 catagatttaagttcaaagatctatactctgccacgaagggtttcagggaaaaggggatactgggagttggtggatttggta 22830485  T

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Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 87
Target Start/End: Complemental strand, 22880125 - 22880042
Alignment:
Q  4 tagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    ||||||||| ||||||||||||||||  || ||||| ||||||| ||||||||||||  ||| |||||||||||||||||||||    
T  22880125 tagatttaaattcaaagatctatactcagccacaaaaggtttcagggaaaaggggctcctgggagttggtggatttggtagagt 22880042  T

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Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 172 - 260
Target Start/End: Complemental strand, 22829312 - 22829223
Alignment:
Q  172 attcaaagggtaaacaaagaaataacctgcaaa-ccttcaaatgcgatgaggcaaccactaaataacttcagaaatcctatttgtgctaa 260  Q
    ||||||||||||| ||||||||||||||| ||| ||||||||||| || |  ||| ||||||||||||||||||||  | ||||||||||    
T  22829312 attcaaagggtaatcaaagaaataacctgtaaaaccttcaaatgcaataaaccaatcactaaataacttcagaaattatgtttgtgctaa 22829223  T

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Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 22913200 - 22913118
Alignment:
Q  5 agatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    ||||| |||| ||||||| |||||||||| ||||||||||||| ||| |||| |||||| | |   |||||||||||||||||    
T  22913200 agattcaagtacaaagatttatactttgcaacaaagggtttcaaggagaaggagctattaggaacaggtggatttggtagagt 22913118  T

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Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 22874208 - 22874164
Alignment:
Q  172 attcaaagggtaaacaaagaaataacctg-caaaccttcaaatgc 215  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||    
T  22874208 attcaaggggtaaacaaagaaataacctgaaaaaccttcaaatgc 22874164  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 21151179 - 21151264
Alignment:
Q  2 catagatttaagttcaaagatctatactttgctacaaagggtttcatggaaaaggggctattggaagttggtggatttggtagagt 87  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||  ||||||||| ||| ||| |||||||||||||||||||||    
T  21151179 catagatttaagttcaaagatctatattttgctacaaaaggtttcggggaaaagggtctactgggagttggtggatttggtagagt 21151264  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 230
Target Start/End: Original strand, 21152349 - 21152442
Alignment:
Q  138 gagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaagaaataacctgc-aaaccttcaaatgcgatgaggcaaccact 230  Q
    ||||||||| ||||||||||| ||||||| | ||||| ||||||||| |||| ||||||||||| |||||||||||||| || |||||||||||    
T  21152349 gagactacaattattattcagtaatatcataaagatttaaagggtaaccaaataaataacctgcaaaaccttcaaatgcaataaggcaaccact 21152442  T

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