View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_167 (Length: 306)
Name: NF7829A_low_167
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_167 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 5 - 281
Target Start/End: Complemental strand, 50494693 - 50494417
Alignment:
| Q |
5 |
acaatgagatgg-acatcaagttgcattattccattccaaacctaggcaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattac |
103 |
Q |
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|||||||||| | ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50494693 |
acaatgagattgcacaccaagttgcattattccattccaaacctagacaaaatttctctagaatacttgtgctgatgaatgaaaattccttttccattac |
50494594 |
T |
|
| Q |
104 |
gagttacttcaacttcaagaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcgtggagcactcaaaatcttcaaataattcttcaca |
203 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
50494593 |
gagttacttcaacttcaagaaagtatctcattttcccaaaatctgtcatagcaaagttcttcttcatggagcactcaaaatcttcaaacaattcttcaca |
50494494 |
T |
|
| Q |
204 |
atttgctttatatatcaaatcgtccacacacagatcgacaatcaaagtctttccttcaacatgtttcacaaatatagt |
281 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||| ||||||||||||||||| |
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| T |
50494493 |
atttgctttatatatcaaatcgtccacacacagaccgacaattgaaatcttt-cttcaacgtgtttcacaaatatagt |
50494417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 290
Target Start/End: Complemental strand, 42971164 - 42971054
Alignment:
| Q |
180 |
aaaatcttcaaataattcttcacaatttgctttatatatcaaatcgtccacacacagatcgacaatcaaagtctttccttcaacatgtttcacaaatata |
279 |
Q |
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|||| |||||||||| |||||| ||| | || ||||||||| ||| || ||| ||||| ||||||||| |||||||||| ||||||||||||| | | |
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| T |
42971164 |
aaaaccttcaaataactcttcataatatcctgtatatatcagatcatctacatacagactcacaatcaaacactttccttcagcatgtttcacaaacaaa |
42971065 |
T |
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| Q |
280 |
gtatgctcatg |
290 |
Q |
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| T |
42971064 |
gtatgctcatg |
42971054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 107 - 166
Target Start/End: Original strand, 40610527 - 40610586
Alignment:
| Q |
107 |
ttacttcaacttcaagaaagtatttcattttcccaaaatctgtcatagcaaagttcttct |
166 |
Q |
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||||||| ||||||||||||||| ||||||| || ||||||||||||||||| ||||||| |
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| T |
40610527 |
ttacttctacttcaagaaagtatctcatttttcccaaatctgtcatagcaaaattcttct |
40610586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 207
Target Start/End: Original strand, 10781721 - 10781806
Alignment:
| Q |
122 |
gaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcgtggagcactcaaaatcttcaaataattcttcacaattt |
207 |
Q |
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| T |
10781721 |
gaaagtacctcatcttccccaagtctgacatagcaaaattcttcttcatggagcatttgaaatcttcaaagaactcttcacaattt |
10781806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 231
Target Start/End: Original strand, 46431407 - 46431519
Alignment:
| Q |
119 |
caagaaagtatttcattttcccaaaatctgtcatagcaaagttcttcttcgtggagcactcaaaatcttcaaataattcttcacaatttgctttatatat |
218 |
Q |
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||||||||||| ||||||| || ||||| ||||| ||||||| |||||| | || |||| || || |||| |||| ||||||||||| | ||||||| |
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| T |
46431407 |
caagaaagtatctcatttttcccaaatcagtcatgacaaagtttttcttcatagaacacttgaagtcatcaattaatacttcacaatttccagtatatat |
46431506 |
T |
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| Q |
219 |
caaatcgtccaca |
231 |
Q |
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|| ||| |||||| |
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| T |
46431507 |
cagatcatccaca |
46431519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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