View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_172 (Length: 302)
Name: NF7829A_low_172
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_172 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 17432353 - 17432070
Alignment:
| Q |
13 |
gttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaagtgacaaaactatgctcacatttgaaccatcaagaga |
112 |
Q |
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| T |
17432353 |
gttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaagtgacaaaactatgctcacatttgaaccatcaagaga |
17432254 |
T |
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| Q |
113 |
tgttactgtaatcataccttgagcccctccgatttgagttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgag |
212 |
Q |
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| T |
17432253 |
tgttactgtaatcataccttgagcccttccgatttgagttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgag |
17432154 |
T |
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| Q |
213 |
ttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttccgacatcttgtaggaagaac |
296 |
Q |
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| T |
17432153 |
ttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttccgacatcttgtaggaagaac |
17432070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 17436226 - 17435943
Alignment:
| Q |
13 |
gttgtcgactagcaccttgaatctccaaagtgctaccactatattgcccattgttgaacacaagtgacaaaactatgctcacatttgaaccatcaagaga |
112 |
Q |
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|||| |||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| |
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| T |
17436226 |
gttgacgactattaccttgtatctccaaagtgctaccactatattccccattgttgaacacaagtgacaaaactatgttcacatttgcaccatctagaga |
17436127 |
T |
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| Q |
113 |
tgttactgtaatcataccttgagcccctccgatttgagttgaacctggattagggtttaacataatagggtcatcgactacaaatattgttccaaatgag |
212 |
Q |
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| T |
17436126 |
tgtcactgtaattacaccttgtgcccttccaatttgagttgaaaatggactagggcttaacatgacggggtcatcaacgacaaatattgttccgaatgag |
17436027 |
T |
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| Q |
213 |
ttgtaggaccaaacctttccattgatgccgataactggttgaacggttgcgccaactccttttccgacatcttgtaggaagaac |
296 |
Q |
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| ||| ||||||||| |||| |||||||||||||| || |||||||||| | |||| |||| |||||||||||| ||||| |
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| T |
17436026 |
tggtaagaccaaacccttccgttgatgccgataaccggcataacggttgcgttgaatcctcttcccacatcttgtaggtagaac |
17435943 |
T |
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