View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_176 (Length: 298)
Name: NF7829A_low_176
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_176 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 48673969 - 48673671
Alignment:
| Q |
1 |
ttagtaatccaaagttcagccgaaagataagtaaagtctgacgataaattgtttccaccgggagtcgagattggattcttccaaatgattcatattaatg |
100 |
Q |
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| T |
48673969 |
ttagtaatccaaagttcagccgaaaggtaagtaaagtctgacgataaattgttttcacctgaagtcgaaattggattcttccaaatgattcatattaatg |
48673870 |
T |
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| Q |
101 |
gaagctctttaaccacttaaattcaatcatttagttgcaatgtataaatctaatccctcaca-nnnnnnngaaagaatttaatccctcacattattgata |
199 |
Q |
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| T |
48673869 |
gaagctctttaaccacttaaattcaatcatttagttgcaatgtataaatctaatccctcacattttttttgaaagaatttaatccctcacattattgata |
48673770 |
T |
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| Q |
200 |
ttctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgtgttgttatatggaggataaatttgaaagtaagttaatattattggagatg |
298 |
Q |
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| T |
48673769 |
ttctaaaaggatcctgaaattgcaacattttaatcaaacttgtccatgtgttgttatatggaggataaatttgaaagtaagttaataatattggtgatg |
48673671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 4156067 - 4156013
Alignment:
| Q |
190 |
attattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtc |
243 |
Q |
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| T |
4156067 |
attatggatattctaaaatgatctctgaaattgcaaaattttaatcaaatttgtc |
4156013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 16297951 - 16297992
Alignment:
| Q |
1 |
ttagtaatccaaagttcagccgaaagataagtaaagtctgac |
42 |
Q |
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| T |
16297951 |
ttagtaatccagagttcggccgaaaaataagtaaagtctgac |
16297992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 40258868 - 40258808
Alignment:
| Q |
185 |
ctcacattattgatattctaaaaggatc-ctgaaattgcaacattttaatcaaacttgtcc |
244 |
Q |
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| T |
40258868 |
ctcacattatcgatattcaaaaatgatctctgaaattacaaaattttaatcaaatttgtcc |
40258808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 237
Target Start/End: Original strand, 12241375 - 12241431
Alignment:
| Q |
182 |
tccctcacattattgatattctaaaaggatcct-gaaattgcaacattttaatcaaa |
237 |
Q |
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| T |
12241375 |
tccctcacattatcgatattttaaaatgattcttgaaattgcaaaattttaatcaaa |
12241431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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