View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_179 (Length: 296)
Name: NF7829A_low_179
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_179 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 296
Target Start/End: Original strand, 3176060 - 3176341
Alignment:
| Q |
15 |
acatcagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatg |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3176060 |
acatgagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatg |
3176159 |
T |
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| Q |
115 |
gtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggtt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3176160 |
gtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttggagaaagagaaaaaccaatactaaagttttggccattttttggtt |
3176259 |
T |
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| Q |
215 |
taagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttataaga |
296 |
Q |
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|||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3176260 |
taagagaatgtaaccttgaaagagagggagttgagtgatgttggtgtgttgagagagtgtgagagttgatctatttataaga |
3176341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 24541258 - 24541537
Alignment:
| Q |
15 |
acatcagaaggtgcatgtgatggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatg |
114 |
Q |
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|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||| ||| || |
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| T |
24541258 |
acatgagaaggtgcatgggatggtgagtggttgtggtgaggtgggctagctaatggtttatgaacaggtgacttagttggggaatgatgtggagttgctg |
24541357 |
T |
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| Q |
115 |
gtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaactaatactaaagttttggccattttttggt- |
213 |
Q |
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| T |
24541358 |
gtttgtgatgaagagtttctagcttttcagcaaatgctatgaaagaggttatttggagaaagagaaaaaacaataagagagttttcgccatttttttgtg |
24541457 |
T |
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| Q |
214 |
ttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttata |
293 |
Q |
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| T |
24541458 |
ttaagagaaggtaaccttgaaagagagggagatgagtgatgttgatgtgttgagagagtgtgagagttgatctatttata |
24541537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 36 - 293
Target Start/End: Original strand, 41525197 - 41525454
Alignment:
| Q |
36 |
ggtgagtggttgtggtgaggtgggctagctaatggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttcta |
135 |
Q |
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||||||||| |||||||||||||| |||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||| |
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| T |
41525197 |
ggtgagtggctgtggtgaggtgggttagccaatggtttatgaaccggtgacttagttgggg-atgaagtggagttgctggtttgtgatgaagagtttcta |
41525295 |
T |
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| Q |
136 |
gctcttcagctaaagctatgaaagaggttatttcgagaaagagaaaaact-aatactaaagttttggccattttttggtttaagagaaggtaaccttgag |
234 |
Q |
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|||||||||| || |||||||| |||||||||| ||| |||||||||| ||||||| |||||||||||||||||| |||||||||| | ||| |||| |
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| T |
41525296 |
gctcttcagcaaatgctatgaaggaggttatttggagtaagagaaaaaaacaatactagagttttggccattttttgttttaagagaatgcaactttgaa |
41525395 |
T |
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| Q |
235 |
agagagggagatgagtgatgttggtgtgttgagagagtgtgatagttgatctatttata |
293 |
Q |
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| T |
41525396 |
agagagggagagaagtaatgttggtgggttgagagagtgtgagagttgatctatttata |
41525454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 68 - 283
Target Start/End: Complemental strand, 20963957 - 20963741
Alignment:
| Q |
68 |
tggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttatt |
167 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
20963957 |
tggtttatgaaccggtgacttagttgggggatgaagtggagttgctggtttgttatgaaaagtttctagctcttcagtaaatgctatgaaagaggttatt |
20963858 |
T |
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| Q |
168 |
tcgagaaagagaaaaactaatactaaagttttggccatt--ttttggtttaagagaaggtaaccttgagagagagggagatgagtgatgttggtgtgttg |
265 |
Q |
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| T |
20963857 |
tggagaaagagaaaaaacaataccagagttttggccattttttttgtgttaagagaaag-aaccttgaaagagagggagaggattgatgttggtgtgttg |
20963759 |
T |
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| Q |
266 |
agagagtgtgatagttga |
283 |
Q |
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| T |
20963758 |
agagagtgtgagagttga |
20963741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 20963995 - 20963958
Alignment:
| Q |
15 |
acatcagaaggtgcatgtgatggtgagtggttgtggtg |
52 |
Q |
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|||| |||||||||||| |||||||||||||||||||| |
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| T |
20963995 |
acatgagaaggtgcatgggatggtgagtggttgtggtg |
20963958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 69 - 183
Target Start/End: Original strand, 14675143 - 14675257
Alignment:
| Q |
69 |
ggtttatgaatcggtgacttagttgggggatgaagtggacttgatggtttgtgatgaaaagtttctagctcttcagctaaagctatgaaagaggttattt |
168 |
Q |
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|||||||| | ||||||||| ||||||||||||||||| ||| |||||||||||||| |||||| |||||||| || || | | |||||||||||||| |
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| T |
14675143 |
ggtttatgcaccggtgactttgttgggggatgaagtggtgttgttggtttgtgatgaagagtttcaagctcttccgcaaacacaacgaaagaggttattt |
14675242 |
T |
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| Q |
169 |
cgagaaagagaaaaa |
183 |
Q |
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| T |
14675243 |
ggagtaagagaaaaa |
14675257 |
T |
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