View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_18 (Length: 470)
Name: NF7829A_low_18
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 13 - 436
Target Start/End: Original strand, 44151446 - 44151867
Alignment:
| Q |
13 |
gatggacatcagtatctgtatttagatttcaattgaagaatgaatcatggtggtaatccatggggatatatagtgacatatgtccttcgaatcgatggac |
112 |
Q |
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| T |
44151446 |
gatggacaacggtatctgtatttagatttcaattgaagaatgaatcatggtggtaatccatagggatatatagtgacatatgtccttcaaatcgatggac |
44151545 |
T |
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| Q |
113 |
ttgtcacaagtcattttcaattcgactaatgacaagatttgatagtaatttcacttcagaaattggatcaacatttcgaggcatatttacctcttgttca |
212 |
Q |
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| T |
44151546 |
ttgtcacaagtcattttcaattcgactaatgacaagatttgatggtaatttcacttcaggaattggatcaacatttcgaggtatatttacctcttgttca |
44151645 |
T |
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| Q |
213 |
tcttcattcaaattgttggtttaattggcattccttcttttggaatgagccatannnnnnnnnnnnnnnnnnnnnnnngtacgattaacggtttctggtt |
312 |
Q |
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| T |
44151646 |
tcttcattcaaattgttggtttaattggcattccttcttttggaatgagccatattttgtttttatatttgattttttgtacgattaacggtttctggtt |
44151745 |
T |
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| Q |
313 |
actggaaacttgacaacggctatctcaaactaatctcccatcggacgtgccaatttgttgccgcggtaatgtttcacttgaacatcaaactatcgtactt |
412 |
Q |
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| T |
44151746 |
actagaatcttgacaatgacta-ctcaaactaatctcccatcggacgtgccaatttgttgccgcggtaatgtttcacttgaacatcaaactaacgtgc-t |
44151843 |
T |
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| Q |
413 |
ttgtcatgtccagcttgatccaaa |
436 |
Q |
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| T |
44151844 |
ttgtcatgtcctgcttgatccaaa |
44151867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 433 - 466
Target Start/End: Original strand, 44151917 - 44151950
Alignment:
| Q |
433 |
caaagacaataagagcattgtttgtaatgagtag |
466 |
Q |
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| T |
44151917 |
caaagacaataagagcattgtttgtaatgagtag |
44151950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 27804631 - 27804684
Alignment:
| Q |
173 |
aattggatcaacatttcgaggcatatttacctcttgttcatcttcattcaaatt |
226 |
Q |
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| T |
27804631 |
aattggatcaacattttgaggcatatttatcaattgttcatcttcactcaaatt |
27804684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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