View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_181 (Length: 296)

Name: NF7829A_low_181
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_181
NF7829A_low_181
[»] chr8 (1 HSPs)
chr8 (15-284)||(6647846-6648107)
[»] chr5 (1 HSPs)
chr5 (14-296)||(5254455-5254727)
[»] chr7 (6 HSPs)
chr7 (15-284)||(4469598-4469858)
chr7 (47-284)||(38690952-38691179)
chr7 (15-186)||(39669515-39669685)
chr7 (221-284)||(39669443-39669506)
chr7 (53-103)||(4468349-4468399)
chr7 (228-279)||(4468526-4468577)
[»] chr1 (4 HSPs)
chr1 (46-284)||(20133787-20134016)
chr1 (15-186)||(24523691-24523860)
chr1 (221-284)||(24523869-24523932)
chr1 (14-92)||(20142132-20142209)
[»] chr6 (1 HSPs)
chr6 (46-279)||(11144106-11144338)
[»] chr2 (1 HSPs)
chr2 (15-284)||(13859575-13859836)
[»] chr3 (1 HSPs)
chr3 (46-284)||(7551350-7551581)
[»] chr4 (1 HSPs)
chr4 (15-147)||(3993294-3993426)
[»] scaffold0136 (2 HSPs)
scaffold0136 (19-186)||(40717-40879)
scaffold0136 (221-284)||(40888-40951)
[»] scaffold0416 (1 HSPs)
scaffold0416 (46-103)||(4368-4425)


Alignment Details
Target: chr8 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 6648107 - 6647846
Alignment:
Q  15 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 114  Q
    ||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||    ||| |||| ||||     
T  6648107 atggacatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatccccata----ttttttttagtttt 6648012  T
Q  115 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtctttt 213  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| |||||||||||||| ||||||  ||||||||||||||||||     
T  6648011 tgttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacatcatctaacgtttgtctttg 6647912  T
Q  214 gtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 284  Q
    ||     |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  6647911 gt-----aactaactctgtctacatatgtgccactttatgccaaactaatcatctttcaactctctatata 6647846  T

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Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 14 - 296
Target Start/End: Complemental strand, 5254727 - 5254455
Alignment:
Q  14 gatggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttt 113  Q
    |||||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||    ||||||    
T  5254727 gatggacatcatagtttgttttctattttttttgtagtgctattttctctatttatttggtaatataaacaacgatccccatatgttttt----ttgttt 5254632  T
Q  114 atgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaaga-aaaaccccatctaacgtttgtcttt 212  Q
     ||||||||||||||||||||| |||||||||||        ||||| |||||||||| ||||||||||||||| |||||| ||||||||||||||||||    
T  5254631 ttgttaactatgtttttctaaagaaacttttgctaaaaaaatttctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtcttt 5254532  T
Q  213 tgtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctatattagatctttta 296  Q
     ||     ||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  5254531 ggt-----aactaactctgtctacatatgtgccactttatgccaaactaataatctctcaa--ctctctatattagatctttta 5254455  T

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Target: chr7 (Bit Score: 136; Significance: 6e-71; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 4469598 - 4469858
Alignment:
Q  15 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 114  Q
    ||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |    |||||||||     
T  4469598 atggacatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgaaccccatatgat----tttttgtttt 4469693  T
Q  115 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtctttt 213  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| |||||||||||||| ||||||| ||||||||||||||||||     
T  4469694 tgttaactatgtttttctaaacaaacttttgct-aaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatctaacgtttgtctttg 4469792  T
Q  214 gtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 284  Q
    ||     |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  4469793 gt-----aactaactatgtctacatatgtgccactttatgccaaactaatcatctctcaactctctatata 4469858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 47 - 284
Target Start/End: Original strand, 38690952 - 38691179
Alignment:
Q  47 gtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttgc 146  Q
    |||||| |||||||||||||||||||||||||||| ||||||| ||||||| |||   ||||||||| |||||||||||||||||||||||||||||||     
T  38690952 gtagtgttattttctctatttatttggcaatataaccaccgat-cccatatgttt---tttttgtttttgttaactatgtttttctaaacaaacttttgt 38691047  T
Q  147 tnnnnnnnnttctctttaaatttgtaccaccaaagaaaagaaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcca 246  Q
    |        ||||| |||||||||| ||| ||||||||| ||||| | |||||||||||||||||| ||     || ||||||||||||||| |||| ||    
T  38691048 tgaaaaaaattctcattaaatttgtgccaacaaagaaaa-aaaaaactcatctaacgtttgtctttggt-----aattaactctgtctacatctgtgtca 38691141  T
Q  247 ctttatgccaaactaatcatctctcaactctctctata 284  Q
    ||||||| ||||| ||||||||||||||||||| ||||    
T  38691142 ctttatgtcaaacaaatcatctctcaactctctatata 38691179  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 39669685 - 39669515
Alignment:
Q  15 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 114  Q
    |||||||||||||||| |||||||       |||||||||||||| |||||||||||||||||||||||||||||||||||||  |||| |||||||||     
T  39669685 atggacatcatagtttattttctatttttttggtagtgctattttttctatttatttggcaatataaacaccgatccccatatgatttt-tttttgtttt 39669587  T
Q  115 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag 186  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| ||||||||||||||    
T  39669586 tgttaactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 39669515  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 284
Target Start/End: Complemental strand, 39669506 - 39669443
Alignment:
Q  221 aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 284  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||| ||||    
T  39669506 aactaactctgtctacatatgtgccactttatgtcaaactaatcatctttcaaatctctatata 39669443  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 103
Target Start/End: Original strand, 4468349 - 4468399
Alignment:
Q  53 ctattttctctatttatttggcaatataaacaccgatccccatatattttt 103  Q
    |||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  4468349 ctattttctctatttatttggcaatataaacatcaatccccatattttttt 4468399  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 4468526 - 4468577
Alignment:
Q  228 tctgtctacatatgtgccactttatgccaaactaatcatctctcaactctct 279  Q
    ||||||||||| ||||||||||||||||||| ||||| |||||||| |||||    
T  4468526 tctgtctacatttgtgccactttatgccaaagtaatcctctctcaaatctct 4468577  T

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Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 46 - 284
Target Start/End: Original strand, 20133787 - 20134016
Alignment:
Q  46 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttg 145  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||||    |||||| |||||||||||||||||||||||||||||||    
T  20133787 ggtagtgctattttctctatttatttggaaatataatcaccgatccccatatgttttt----ttgtttttgttaactatgtttttctaaacaaacttttg 20133882  T
Q  146 ctnnnnnnnnttctctttaaatttgtaccaccaaagaaaagaaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtgcc 245  Q
    ||        ||||| |||||||||| ||||||||||||| ||||||| |||||||||||||||||| ||     |||||||||||||||||| ||||||    
T  20133883 ctaaaaaaatttctcattaaatttgtgccaccaaagaaaaaaaaaacctcatctaacgtttgtctttggt-----aactaactctgtctacatctgtgcc 20133977  T
Q  246 actttatgccaaactaatcatctctcaactctctctata 284  Q
    ||||||||||||||||||||| |||||||||||| ||||    
T  20133978 actttatgccaaactaatcatttctcaactctctatata 20134016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 24523691 - 24523860
Alignment:
Q  15 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 114  Q
    |||||| |||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||  |||||||||     
T  24523691 atggacgtcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatccccatatgtttt--tttttgtttt 24523788  T
Q  115 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag 186  Q
    |||||||||||||||||||||||||||||||||        ||||| |||||||||| ||||||||||||||    
T  24523789 tgttaactatgtttttctaaacaaacttttgctaaaaaagattctcattaaatttgtgccaccaaagaaaag 24523860  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 24523869 - 24523932
Alignment:
Q  221 aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 284  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||| ||||    
T  24523869 aactaactctgtctacatatgtgccattttatgtcaaactaatcatctcttaactctctatata 24523932  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 20142132 - 20142209
Alignment:
Q  14 gatggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccc 92  Q
    |||||||||||||||||||||||||       |||||||||||||| ||||||||||||||||||||||||| ||||||    
T  20142132 gatggacatcatagtttgttttctatttttttggtagtgctatttt-tctatttatttggcaatataaacacggatccc 20142209  T

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Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 46 - 279
Target Start/End: Original strand, 11144106 - 11144338
Alignment:
Q  46 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatat-atttttgtttttgtttatgttaactatgtttttctaaacaaactttt 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  11144106 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatgttttttttttttgtttttgttaactatgtttttctaaacaaactttt 11144205  T
Q  145 gc--tnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatg 241  Q
    ||           ||||| |||||||| |||||| ||||||||| ||||| | |||||||||||||||||| ||     |||||||||||||||||||||    
T  11144206 gcaaaaaaaaaaattctcattaaatttataccactaaagaaaagaaaaaatctcatctaacgtttgtctttggt-----aactaactctgtctacatatg 11144300  T
Q  242 tgccactttatgccaaactaatcatctctcaactctct 279  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11144301 tgccactttatgccaaactaatcatctctcaactctct 11144338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 15 - 284
Target Start/End: Complemental strand, 13859836 - 13859575
Alignment:
Q  15 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 114  Q
    ||||||||||||||||||||||||       |||||||||||||||| ||||||||||||||||||||||| ||||||||||    ||| |||| ||||     
T  13859836 atggacatcatagtttgttttctatttttttggtagtgctattttctatatttatttggcaatataaacactgatccccata----ttttttttagtttt 13859741  T
Q  115 tgttaactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag-aaaaaccccatctaacgtttgtctttt 213  Q
    |||||||||||||||| ||||||||||||||||        ||||| |||||||||| |||||||||||||| ||||||| ||| ||||||||||||||     
T  13859740 tgttaactatgtttttgtaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaagaaaaaacctcatataacgtttgtctttg 13859641  T
Q  214 gtaaccaaactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 284  Q
     |     ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13859640 at-----aactaactctgtctatatatgtgccactttatgccaaactaatcatctctcaactctctatata 13859575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 46 - 284
Target Start/End: Complemental strand, 7551581 - 7551350
Alignment:
Q  46 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgttaactatgtttttctaaacaaacttttg 145  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||   ||||||||| |||||||||||||||||||||||||||||||    
T  7551581 ggtagtgttattttctctatttatttggcaatataaccaccgatccccatatgttt---tttttgtttttgttaactatgtttttctaaacaaacttttg 7551485  T
Q  146 c--tnnnnnnnnttctctttaaatttgtaccaccaaagaaaagaaaaaccccatctaacgtttgtcttttgtaaccaaactaactctgtctacatatgtg 243  Q
    |           ||||| |||||||||| ||| ||||||||| |||||   |||||||||||||||||| ||     |||||||||||||||||| ||||    
T  7551484 ccaaaaaaaaaattctcattaaatttgtgccaacaaagaaaa-aaaaatatcatctaacgtttgtctttggt-----aactaactctgtctacatctgtg 7551391  T
Q  244 ccactttatgccaaactaatcatctctcaactctctctata 284  Q
     ||||||||| ||||| ||||||||||||||||||| ||||    
T  7551390 tcactttatgtcaaacaaatcatctctcaactctctatata 7551350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 3993294 - 3993426
Alignment:
Q  15 atggacatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgttta 114  Q
    ||||||||||||||||||||||||        |||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||  ||||||||     
T  3993294 atggacatcatagtttgttttctatttttttcgtagcgctattttctctatttatttagcaatataaacaccgatccccatatgttttttgttttgtttt 3993393  T
Q  115 tgttaactatgtttttctaaacaaacttttgct 147  Q
    |||||||||||||||||||||||||||||||||    
T  3993394 tgttaactatgtttttctaaacaaacttttgct 3993426  T

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Target: scaffold0136 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 40717 - 40879
Alignment:
Q  19 acatcatagtttgttttctannnnnnnggtagtgctattttctctatttatttggcaatataaacaccgatccccatatatttttgtttttgtttatgtt 118  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||     ||||    
T  40717 acatcatagtttgttttctatttttttggtagtgctattttctctatttatttggcaatataaacaccgatcctcatattttatttttttt-----tgtt 40811  T
Q  119 aactatgtttttctaaacaaacttttgctnnnnnnnnttctctttaaatttgtaccaccaaagaaaag 186  Q
    |||||||||||||||||||||||||||||        ||||| |||||||||| ||||||||||||||    
T  40812 aactatgtttttctaaacaaacttttgctaaaaaaaattctcattaaatttgtgccaccaaagaaaag 40879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 221 - 284
Target Start/End: Original strand, 40888 - 40951
Alignment:
Q  221 aactaactctgtctacatatgtgccactttatgccaaactaatcatctctcaactctctctata 284  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  40888 aactaactttgtctacatatgtgccactttatgtcaaactaatcatctctcaactctctatata 40951  T

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Target: scaffold0416 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 4368 - 4425
Alignment:
Q  46 ggtagtgctattttctctatttatttggcaatataaacaccgatccccatatattttt 103  Q
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T  4368 ggtagtgttattttctctatttatttggcaatataaccaccgatccccatatgttttt 4425  T

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