View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_182 (Length: 296)
Name: NF7829A_low_182
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_182 |
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Alignment Details
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 54235487 - 54235536
Alignment:
| Q |
199 |
ttgccgtcacccgctgcggttgtctccgccgcttacctctctcttcaacc |
248 |
Q |
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| T |
54235487 |
ttgccgtcacccgctgcggttgtctccgccgcctacgtctctcctcaacc |
54235536 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 7310976 - 7311041
Alignment:
| Q |
119 |
ccagaaaatcaaaccctctccgatccacctgacttcagcgtcgttgattccgatctcgtcgtcatc |
184 |
Q |
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| T |
7310976 |
ccagaaaatcaaaccctctccgactcacctgactccaccgtcattaattctgatttcgtcatcatc |
7311041 |
T |
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