View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_185 (Length: 295)
Name: NF7829A_low_185
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_185 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 20752085 - 20752367
Alignment:
| Q |
4 |
tgaatatgtattgagagaagctggaaagttgcatcgggcattcagaaccaaaattgccaagttttttcttaaagatagtaatggcgattttaataaacaa |
103 |
Q |
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| T |
20752085 |
tgaatatgtattgagagaagctggaaagttgcatcgggcattcagaaccaaaattgccaagttttttctgaaagatagtaatggcgattttaataaacaa |
20752184 |
T |
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| Q |
104 |
cgtcctgcgaaatattcttactgtataaaacaagagcattgggataactttgtagctcagcgtaagagtacacattttcaggtattatttttattactta |
203 |
Q |
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| T |
20752185 |
cgtcctgcgaaatattcttactgtataaagcaagagcattgggataactttgtagctcagcgtaagagtacacattttcaggtattatttttattactta |
20752284 |
T |
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| Q |
204 |
gttacgggtccttaatgttttacatgctaatagttttatctcatatattacaatttaaaattcttattattagtgatattgtt |
286 |
Q |
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| T |
20752285 |
gttacgggtccttaatgttttacatgctaatagttttacctcatatattacaatttaaaattcttattattagtgatattgtt |
20752367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 140933 - 141215
Alignment:
| Q |
4 |
tgaatatgtattgagagaagctggaaagttgcatcgggcattcagaaccaaaattgccaagttttttcttaaagatagtaatggcgattttaataaacaa |
103 |
Q |
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| T |
140933 |
tgaatatgtattgagagaagctggaaagttgcatcgggcattcagaaccaaaattgccaagttttttctgaaagatagtaatggtgattttaataaacaa |
141032 |
T |
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| Q |
104 |
cgtcctgcgaaatattcttactgtataaaacaagagcattgggataactttgtagctcagcgtaagagtacacattttcaggtattatttttattactta |
203 |
Q |
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| T |
141033 |
cgtcctgcgaaatattcttactgtataaaacaagagcattgggataactttgtagctcagcgtaagagtacacattttcaggtattatttttattactta |
141132 |
T |
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| Q |
204 |
gttacgggtccttaatgttttacatgctaatagttttatctcatatattacaatttaaaattcttattattagtgatattgtt |
286 |
Q |
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| T |
141133 |
gttacgggtccttaatgttttacatgctaatagttttacctcatatattacaatttaaaattcttattattagtgatactgtt |
141215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 17389368 - 17389652
Alignment:
| Q |
1 |
tcatgaatatgtattgagagaagctggaaagttgcatcgggcattcagaaccaaaattgccaagttttttcttaaagatagtaatggcgattttaataaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||| | |||||||||||| |
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| T |
17389368 |
tcatgaatatgtattgagagaagctggaaagttgcatcgggcgttcagaaccaaaatttccaagttttttctgaaagatagtaattgtgattttaataaa |
17389467 |
T |
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| Q |
101 |
caacgtcctgcgaaatattcttactgtataaaacaagagcattgggataactttgtagctcagcgtaagagtacacattttcaggtattatttttattac |
200 |
Q |
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| T |
17389468 |
caacgtcctgcgaaatattcttattgtataaaacaagagcattgggataactttgtagctcaacgtatgagtatacattttcatgtaatatttttattac |
17389567 |
T |
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| Q |
201 |
ttagttacgggtccttaatgttttacatgctaatagttttatctcatatattacaatttaaaattcttattattagtgatattgtt |
286 |
Q |
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| T |
17389568 |
ttagtcacggatccttaatgttttacatgctaatagttttacctcatatattacaatttaaaattc-tagtattagtgatattgtt |
17389652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 16318317 - 16318425
Alignment:
| Q |
39 |
gggcattcagaaccaaaattgccaagttttttcttaaagatagtaatggcgattttaataaacaacgtcctgcgaaatattcttactgtataaaacaaga |
138 |
Q |
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|||||||||||||||| || || ||||| | ||| ||||| |||||||| | ||| |||||||||||||| || ||||||| |||||||||||||||||| |
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| T |
16318317 |
gggcattcagaaccaacatggcaaagttgtatctaaaagacagtaatggtgctttcaataaacaacgtccggcaaaatatttttactgtataaaacaaga |
16318416 |
T |
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| Q |
139 |
gcattggga |
147 |
Q |
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| T |
16318417 |
gtattggga |
16318425 |
T |
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