View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_19 (Length: 470)
Name: NF7829A_low_19
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_19 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 18164418 - 18163957
Alignment:
| Q |
9 |
gagatggacatcatctgttttttctttccggcgacaatgaaactttgagttaatagtttagatataaaactagaatttatagtattcagatacacacaga |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164418 |
gagatggtgatcatctgttttttctttccggcgacaatgaaactttgagttaatagtttagatataaaactagaatttatagtattcagatacacacaga |
18164319 |
T |
|
| Q |
109 |
ttacataaaatctcattggagatgttgctaatctccttttactatgcaataattttgaaaatttcttttcatgcttatactagatgcagatcataatgaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164318 |
ttacataaaatctcattggagatgttgctaatctccttttactatgcaataattttgaaaatttcttttcatgcttatactagatgcagatcataatgaa |
18164219 |
T |
|
| Q |
209 |
tgcacacccaaaggaatgaaagaaacaatacaaaactacataataatcaaacttgttgctagctctggttgttttgcttcattttcacatgcattgtatc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164218 |
tgcacacccaaaggaatgaaagaaacaatacaaaactacataataatcaaacttgttgctagctctggttgttttgcttcattttcacatgcattgtatc |
18164119 |
T |
|
| Q |
309 |
actgctaacctaaatgaaaaattggaataaaatactcggttcacttgtgagtggttaagttcagatcgtctatgaatggtgaaaaagtggataattagag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164118 |
actgctaacctaaatgaaaaattggaataaaatactcggttcacgtgtgagtggttaagttcacatcgtctatgaatggtgaaaaagtggataattagag |
18164019 |
T |
|
| Q |
409 |
aggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctctacctctct |
470 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18164018 |
aggtgactcatacacctaatgtattaagattttgggtggagatgtggcgtctctacctctct |
18163957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 405 - 461
Target Start/End: Original strand, 11199982 - 11200038
Alignment:
| Q |
405 |
agagaggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctc |
461 |
Q |
| |
|
|||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||| |
|
|
| T |
11199982 |
agagaggtgactcatatgcctaatgccttaaggttttgggtggagatgtggcgtctc |
11200038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 405 - 461
Target Start/End: Complemental strand, 28296126 - 28296070
Alignment:
| Q |
405 |
agagaggtgactcatacacctaatgtattaagattttgggtggatatgtggcgtctc |
461 |
Q |
| |
|
||||||||||| |||| ||||||| | ||||| ||||||||||| |||||| ||||| |
|
|
| T |
28296126 |
agagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtctc |
28296070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University