View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_193 (Length: 293)
Name: NF7829A_low_193
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_193 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 4 - 281
Target Start/End: Original strand, 52584625 - 52584902
Alignment:
| Q |
4 |
ttaattgtagctagcnnnnnnngtctgagagaaagtgattgaaaaaataaactagttctatacttgtattgtattgtgtcccttaagggaacaactcaat |
103 |
Q |
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| T |
52584625 |
ttaattgtagctagctttttttgtctgagagaaagtgattgaataaataaactagttctatacttgtattgtattgtgtcccttaagggaacaactcaat |
52584724 |
T |
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| Q |
104 |
tggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaagagaaaaggagtgaaagggggaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52584725 |
tggaaaaatgaagcatgtgagttttgtgatgtggatctctctagaacagtgaaagaagagagatttttatggaaaaggagaaaaggagtgaaagggggaa |
52584824 |
T |
|
| Q |
204 |
tcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatatt |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52584825 |
tcgaatcgaatcgaatcaacactgttttttacgtactgaagaaactatttgagcaaaaaagctagtatagtatatatt |
52584902 |
T |
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