View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_196 (Length: 290)
Name: NF7829A_low_196
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_196 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 99 - 290
Target Start/End: Complemental strand, 41686663 - 41686472
Alignment:
| Q |
99 |
tcagcaaaattttgtctttgaccctctcttgtctcttccgtctcccttccttcaccctgtcctttctgccccaccgccgccgccaacacccatcctcata |
198 |
Q |
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| T |
41686663 |
tcagcaaaattctgtctttgaccctctcttgtctcttccgtctcccttccttcaacctgtcctttctgccccaccaccgccgccaacacctatcctcata |
41686564 |
T |
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| Q |
199 |
cccatcattccttcatttagttgtggtatcatctttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtga |
290 |
Q |
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| T |
41686563 |
cccatcattccttcatttagttgtggtatcatatttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtga |
41686472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 99 - 290
Target Start/End: Original strand, 18317240 - 18317417
Alignment:
| Q |
99 |
tcagcaaaattttgtctttgaccctctcttgtctcttccgtctcccttccttcaccctgtcctttctgccccaccgccgccgccaacacccatcctcata |
198 |
Q |
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| T |
18317240 |
tcagcgaaattttgtctttgaccctctc--gtctcttccgtctcccttccttcaccatgtcctttccatcccaccaccgctgccaacacccatcct---- |
18317333 |
T |
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| Q |
199 |
cccatcattccttcatttagttgtggtatcatctttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtga |
290 |
Q |
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| T |
18317334 |
--------tccttcatttagttgtggtatcagctttcctttcaccaccacagaactccaggattgtgacttattgccaatacctaactgtga |
18317417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 187
Target Start/End: Original strand, 7149629 - 7149717
Alignment:
| Q |
99 |
tcagcaaaattttgtctttgaccctctcttgtctcttccgtctcccttccttcaccctgtcctttctgccccaccgccgccgccaacac |
187 |
Q |
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| T |
7149629 |
tcagcaaaattttgtctttggccctctcttgtctcttgtgtctcccttcctttaccttgtcctttccaccccaccaccgctgccaacac |
7149717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 49210095 - 49210160
Alignment:
| Q |
225 |
tatcatctttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtga |
290 |
Q |
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| T |
49210095 |
tatcagctttcctttcactaccacagaacgccaggactgtggcttattgccaatacctgactgtga |
49210160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 49665398 - 49665463
Alignment:
| Q |
225 |
tatcatctttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtga |
290 |
Q |
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| T |
49665398 |
tatcagcttccctttcactacaacagaacgccaggactgtggcttattgccaatacctaactgtga |
49665463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 49708955 - 49709020
Alignment:
| Q |
225 |
tatcatctttcctttcactactacagaacttcaggattgtgatttattgccaatacctaactgtga |
290 |
Q |
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| T |
49708955 |
tatcagcttccctttcactacaacagaacgccaggactgtggcttattgccaatacctaactgtga |
49709020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 187
Target Start/End: Complemental strand, 8476878 - 8476797
Alignment:
| Q |
106 |
aattttgtctttgaccctctcttgtctcttccgtctcccttccttcaccctgtcctttctgccccaccgccgccgccaacac |
187 |
Q |
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| T |
8476878 |
aattttgtttgtgaccctcttttctctcttctgtcacctttccttcaccctatcttttctgaccgaccgccgccgccaacac |
8476797 |
T |
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