View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_20 (Length: 469)
Name: NF7829A_low_20
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 36773899 - 36774363
Alignment:
| Q |
1 |
tcaataaaacataagtattgtcattcatgacatacacaaatcacttcatttgtgttccatgcaatgtgtgtgcatctagtagtaaaaatggtaacaagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36773899 |
tcaataaaacataagtattgtcattcatgacatacacaaatcacttcatttgtgttccatgcaatgtgtgtgcatctagtagtaaaaatggtaacaagat |
36773998 |
T |
|
| Q |
101 |
tttctaaccttcatgtatttgtttaaaccataccatgttaatcagtatatgtgtgtgcgaattcaaaaacacagtaaccgtaaatataaacacgacattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36773999 |
tttctaaccttcatgtatttgtttaaaccataccatgttaatcagtatatgtgtgtgcgaattcaaaaacacagtaaccgtaaatataaacatgacattc |
36774098 |
T |
|
| Q |
201 |
aacagtttttaactaaccatgtaattgctccagctcagcgcaggcataatgccttgtgaagaaggcaaaaaaggaggcacataagattgaatggcctgtc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36774099 |
aacagtttttaactaaccatgtaattgctccagctgagcgcaggcataatgccttgtgaagaaggcaaaaaaggaggcacataagattgaatggcctgtc |
36774198 |
T |
|
| Q |
301 |
cagataaatatgacattctcggcattgaccatgcaggaaacccaccagcatatggaaaacctgatgaagtaacagttgtggagggaggggacgcagccac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36774199 |
cagataaatatgacattctcggcattgaccatgcaggaaaaccaccagcatatggaaaacctgatgaagtaacagttgtggagggaggggacgcagccac |
36774298 |
T |
|
| Q |
401 |
tggataagctcctccaaaggaagctgcctgttgtggatgatgaaacttgcatgcaactccaaact |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36774299 |
tggataagctcctccaaaggaagctgcctgttgtggatgatgaaacttgcatgcaactccaaact |
36774363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University