View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_202 (Length: 286)
Name: NF7829A_low_202
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_202 |
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| [»] chr8 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 64374 - 64104
Alignment:
| Q |
17 |
acatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattatcaacaccgcc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
64374 |
acatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattctcaacaccgcc |
64275 |
T |
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| Q |
117 |
actctcagtacataacactgatgctattttactagggcctataccataatcatgaagcacatcaataag-nnnnnnnngcactggggttttctttctatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
64274 |
actctcagtacataacactgatgctattttactagggcctataccagaatcatgaagcacatcaataagtttttttttgcactggggttttctttctatg |
64175 |
T |
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| Q |
216 |
tactcgaagatgttgagaacttcttcgggaaaatagtacatgattatggtctcttacaaatctagaaacaa |
286 |
Q |
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| T |
64174 |
tactcgaagatgttgtgaacttcttcgggaaaatagtacatgattatggtctcttacaaatctagaaacaa |
64104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 51166368 - 51166116
Alignment:
| Q |
17 |
acatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattatcaacaccgcc |
116 |
Q |
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| T |
51166368 |
acatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattatcaacaccacc |
51166269 |
T |
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| Q |
117 |
actctcagtacataacactgatgctattttactagggcctataccataatcatgaagcacatcaataag------nnnnnnnngcactggggttttcttt |
210 |
Q |
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| T |
51166268 |
actctcagtacataacactgatgctattttactagggcctataccagaatcatgaagcacatcaataagttttttttttttttgcactggggttttcttt |
51166169 |
T |
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| Q |
211 |
ctatgtactcgaagatgttgagaacttcttcgggaaaatagtacatgattatg |
263 |
Q |
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| T |
51166168 |
ctatgtactcgaagatgttgtgaacttcttggggaaaatagtacatgattatg |
51166116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 285
Target Start/End: Complemental strand, 16080727 - 16080467
Alignment:
| Q |
25 |
tgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattatcaacaccgccactctcag |
124 |
Q |
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| T |
16080727 |
tgagcatctccattttctaattgtttttgtctcttcacagttaaataattaataacatcttgttggctaaatccaacattatcaacaccaccactctctt |
16080628 |
T |
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| Q |
125 |
tacataacactgatgctattttactagggcctataccataatcatgaagcacatcaataagnnnnnnnngcactggggttttctttctatgtactcgaag |
224 |
Q |
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| T |
16080627 |
tacataacactgatgctattttactagggcctataccagaatcatcaagcacatcaataagttttttttgcactttggttttgcttctatgtactctaag |
16080528 |
T |
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| Q |
225 |
atgttgagaacttcttcgggaaaatagtacatgattatggtctcttacaaatctagaaaca |
285 |
Q |
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| T |
16080527 |
aaagtgtgaactgtttggggaaaatagttcatgattatggtctcttacaaatctagaaaca |
16080467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 17 - 286
Target Start/End: Complemental strand, 48772837 - 48772568
Alignment:
| Q |
17 |
acatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattatcaacaccgcc |
116 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
48772837 |
acatcaactgagcatctccattttctaattgtttttgtctcttcacagttaaataattaataacatcttgttggctaaatccaacattatcaacaccacc |
48772738 |
T |
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| Q |
117 |
actctcagtacataacactgatgctattttactagggcctataccataatcatgaagcacatcaataagnnnnnnnngcactggggttttctttctatgt |
216 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||| |||||||| |
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| T |
48772737 |
actctcgatacataacactgatgctattttactagggcctataccagaatcatcaagcacatcaataagttttttttgcactttggttttgcttctatgt |
48772638 |
T |
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| Q |
217 |
actcgaagatgttgagaacttcttcgggaaaatagtacatgattatggtctcttacaaatctagaaacaa |
286 |
Q |
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| T |
48772637 |
actctaagaaactgtgaactgtttagggaaaatagttcatgattatggtctctaacaaatctaaaaacaa |
48772568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 44885673 - 44885787
Alignment:
| Q |
17 |
acatcaagtgagcatctccattttctaattgtttttgtctctttacacttaaataattaataacatcttgttggctaaatccaacattatcaacaccgcc |
116 |
Q |
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||||||| |||||||||| ||||| |||||||||||||||| ||||||||| ||||| |||||||||||||| ||| |||||| |||||||| |||||| |
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| T |
44885673 |
acatcaattgagcatctctgttttcaaattgtttttgtctctgtacacttaagtaattgataacatcttgttgactagatccaaaattatcaataccgcc |
44885772 |
T |
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| Q |
117 |
actctcagtacataa |
131 |
Q |
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||| ||||| ||||| |
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| T |
44885773 |
actttcagtgcataa |
44885787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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