View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_203 (Length: 286)
Name: NF7829A_low_203
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_203 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 7 - 278
Target Start/End: Original strand, 30750461 - 30750732
Alignment:
| Q |
7 |
tcttcatcaccatgggagaaccatctaatcttcacctcccactaagaagattggatgcatgtgttttagattgtttgtgcctcaaatttgtaattaaaaa |
106 |
Q |
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| T |
30750461 |
tcttcatcaccatgggagaaccatctaatcttcacctcccactaagaaagttggatgcatgtgttttagattgtttgtgcctcaaatttgtaattaaaaa |
30750560 |
T |
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| Q |
107 |
ccagagttataaacactcctatccatatttcttatcctctcactcgacctaaagaagatttaaatgttaatgggtgagcaagaagcaaggaattggtgca |
206 |
Q |
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| T |
30750561 |
ccagaattataaacactcctatccatatttcttaccgtctcactcgacctaaagaagatttaaatgttaatgggtgaggaagaagcaaggaattggtgca |
30750660 |
T |
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| Q |
207 |
aggattgaagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttctt |
278 |
Q |
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| T |
30750661 |
aggattcaagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttctt |
30750732 |
T |
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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 30760552 - 30760625
Alignment:
| Q |
204 |
gcaaggattgaagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttct |
277 |
Q |
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| T |
30760552 |
gcaaggattgaagttagggtttcaagaatttagagaagctatattatttattgatgcttgttggggtatgttct |
30760625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 241500 - 241546
Alignment:
| Q |
165 |
tttaaatgttaatgggtgagcaagaagcaaggaattggtgcaaggat |
211 |
Q |
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| T |
241500 |
tttaaatgttgatgggtgaggaagaagcaaggaatttgtgcaaggat |
241546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 211
Target Start/End: Complemental strand, 14575875 - 14575829
Alignment:
| Q |
165 |
tttaaatgttaatgggtgagcaagaagcaaggaattggtgcaaggat |
211 |
Q |
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| T |
14575875 |
tttaaatgttgatgggtgaggaagaagcaaggaatttgtgcaaggat |
14575829 |
T |
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