View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_208 (Length: 285)
Name: NF7829A_low_208
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_208 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 279
Target Start/End: Complemental strand, 48839238 - 48838975
Alignment:
| Q |
13 |
gaaaacaataaatcataaatgctactacagtaagttgcacagatagataaccaaccaattcatcttgttttgtgtatactatagtattagtgccgtgcaa |
112 |
Q |
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| T |
48839238 |
gaaaacaataaatcataaatgctactacagtaagttgcacagata----accaaccaattcatcttgttttgtgtatactatagtattagtaccgtgcaa |
48839143 |
T |
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| Q |
113 |
tgttgttcatcttcgggtctcaaaactaaactgaccatgcttatatatcgattgaattaatcacgttaaaaatagcgctagttgataagtcagtatatat |
212 |
Q |
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| T |
48839142 |
tgttgttcatcttcgggtctcaaaactcaactgaccatgtttatctatcgattgaattaatcatgttaaaaatagcgctagttgataagt-agtatatat |
48839044 |
T |
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| Q |
213 |
tatattaatc--tataaacttattggagagcgtcgaaagtgataatgggctaaatatccatgactcacc |
279 |
Q |
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|||||||||| || ||| |||||| |||||||||||||||| |||||||||||||||||||||||||| |
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| T |
48839043 |
tatattaatcgataaaaatttattgaagagcgtcgaaagtgacaatgggctaaatatccatgactcacc |
48838975 |
T |
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