View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_209 (Length: 285)
Name: NF7829A_low_209
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_209 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 4 - 275
Target Start/End: Original strand, 5035460 - 5035731
Alignment:
| Q |
4 |
tttggtgttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgta |
103 |
Q |
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| T |
5035460 |
tttggtgttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgta |
5035559 |
T |
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| Q |
104 |
atttaataacttttatagcagtgtttgtgaaataaaaaacttacaaagcacatatattaaagannnnnnnnaaggatatctattaaagaattaaaaaatt |
203 |
Q |
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| T |
5035560 |
atttaataacttttataacagagtttgtgaaataaaaaacttacaaagcacatatattaaagattttttttaaggatatctattaaagaattaaaaaatt |
5035659 |
T |
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| Q |
204 |
cacttcacaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtggaaagacctcg |
275 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5035660 |
cacttcacaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtggaaagacctcg |
5035731 |
T |
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