View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_211 (Length: 284)
Name: NF7829A_low_211
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_211 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52543549 - 52543778
Alignment:
| Q |
1 |
tcaagggaacgagtgtcgaggaagaaaggaccagagtgaggggtttggagagtgaagagtgcggaagcatgaatggttgaagatgggaaatctaagcaga |
100 |
Q |
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| T |
52543549 |
tcaagggaacgagtgtcgaggaagaaaggaccagagtgaggggtttggagagtgaaaagtgctgaagcatgaatggttgaagatgggaaatctaagtaga |
52543648 |
T |
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| Q |
101 |
gtgtgagggaaatgtgagtggttggtgggtgagttgagtctgtgtatgagtgaggatcaacgggtgccattgttgttgttggtgaatggagtaaaaatgg |
200 |
Q |
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| T |
52543649 |
gtgtgagggaaatgtgagtggttggtgggtgagttgaatctgtgtatgaatgaggatcaacgggtgccattgttgttgttggtgaatggagtaaaaatgg |
52543748 |
T |
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| Q |
201 |
gaatagaggaaggagaagaagaagaacatg |
230 |
Q |
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| T |
52543749 |
gaatagaggaaggagaagaagaagaacatg |
52543778 |
T |
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