View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_217 (Length: 281)
Name: NF7829A_low_217
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_217 |
 | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
| [»] scaffold1361 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0045 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 268
Target Start/End: Original strand, 10909266 - 10909522
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaatcaacggaaagtgagttttc |
112 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909266 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaatcaacggaaagtgagttttc |
10909365 |
T |
|
| Q |
113 |
aagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttgg |
211 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
10909366 |
aagtgagcaaggagttgcctttgtaaaacttcactttgcggccatttcgttcgcaaaactaaccctgtcattttgtttgggaagtgaagaaaacccttgg |
10909465 |
T |
|
| Q |
212 |
ttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttaccatat |
268 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10909466 |
ttaataagtcttcaccaccaacaaaaccaccactcacaaccacaatctttaccatat |
10909522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 13 - 265
Target Start/End: Complemental strand, 2409983 - 2409728
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagc-tggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagttt |
110 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||||||||||| | |||| ||||||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
2409983 |
tctacctttccttttgtccctgagccagatttggcatcagagcctagttatgatacctcggagttgagttcgtgcgaaaaaatcaacgtaaagtgagttt |
2409884 |
T |
|
| Q |
111 |
tcaagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaaccctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
2409883 |
tcaagtgagcaaggagttgcctttgtaaaacttcactttgcggccattttgttcgcaaaactaacaccgccattttgtttgggaagtgaagaaaaccctt |
2409784 |
T |
|
| Q |
210 |
ggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttacca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| | || |||||| |||| |
|
|
| T |
2409783 |
ggttaacaagtcttcaccaccaacaaaatcaccactcaccatcaaaatcttcacca |
2409728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 734605 - 734445
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgc-gaaaaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||| |
|
|
| T |
734605 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgcgcgggaaaatcaacgaaaagtgagtttt |
734506 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaacta |
172 |
Q |
| |
|
||||||||||||||||||| || |||| |||||||||| ||| | ||||||||| |||||| |
|
|
| T |
734505 |
caagtgagcaaggagttgctttcttaaatcttcactttgcggcta-tttgttcgcgaaacta |
734445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 258
Target Start/End: Complemental strand, 2409736 - 2409698
Alignment:
| Q |
220 |
tcttcaccaccaacaaaaccaccactcacaaccacaatc |
258 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
2409736 |
tcttcaccaccaacaaaaccaccacccaccaccacaatc |
2409698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 6 - 268
Target Start/End: Complemental strand, 42680816 - 42680553
Alignment:
| Q |
6 |
aatattttctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaatcaacggaaagtg |
105 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42680816 |
aatattctctacattttcttttgtccctgagccagatttggcatcagagctggttacgatacctcaaagttgagtttgtgcgaaaaatcaacggaaagtg |
42680717 |
T |
|
| Q |
106 |
agttttcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaa |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||| || |
|
|
| T |
42680716 |
agttttcaagtgagcaaggagttgcctttgtaaaacttcactttgtaaccattttgttcgcaaaacaaaccccgtcattttgtttgggaagtgaagaaaa |
42680617 |
T |
|
| Q |
205 |
cccttggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttaccatat |
268 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
42680616 |
cccttgattaacaagtcttcaccaccaacaaaaccaccactcataaccacaatctttaccatat |
42680553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 8733521 - 8733342
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcg-aaaaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| || |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||| |
|
|
| T |
8733521 |
tctaccttctcttttgtccctgagccagatttggcatcagagctggttacaatacctcggagttgagtttgagcgaaaaaatcaacggaaagtgagtttt |
8733422 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttg |
190 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
8733421 |
caagtgagcaaggagttgcctttgtgaaacttcactttgcggccattttgatcgcgaaactaacaccgtcattttgtttg |
8733342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 19786940 - 19787116
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcg-aaaaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19786940 |
tctacctttccttttgtccctgagctagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacggaaagtgagtttt |
19787039 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgt |
187 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||| |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
19787040 |
caagtgagtaaggagttgcctttgtgaaacttcactttgcggccattttgatcgcgaaactaacaccgtcattttgt |
19787116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 23 - 259
Target Start/End: Original strand, 3052371 - 3052598
Alignment:
| Q |
23 |
cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcg--aaaaatcaacggaaagtgagttttcaagtgagc |
120 |
Q |
| |
|
||||||| ||| ||||| ||||| ||||||||||||||||| || | ||||||||||||| ||| |||||||||||||||||| | | |
|
|
| T |
3052371 |
cttttgtccctcagccagatttgacatcagagctggttacgtaactttggagttgagtttgagcggaaaaaatcaacggaaagtgtg------------c |
3052458 |
T |
|
| Q |
121 |
aaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaag |
219 |
Q |
| |
|
|||||| |||||| ||||| |||||||||| ||||||||||||||| |||||||| ||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
3052459 |
aaggagctgccttcgtaaaacttcactttgcggccattttgttcgctaaactaacaccgtcattttgtttgggaagtgaagaaaacccttggttaacaag |
3052558 |
T |
|
| Q |
220 |
tcttcaccaccaacaaaaccaccactcacaaccacaatct |
259 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
3052559 |
tcttcaccaccaacaaaaccaccactcaccaccacaatct |
3052598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 16535151 - 16534985
Alignment:
| Q |
23 |
cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgc-gaaaaatcaacggaaagtgagttttcaagtgagca |
121 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||| |
|
|
| T |
16535151 |
cttttgtccccgagccagatttggcatcagagctggttacgatacctcggagttgagtttgcgcgggaaaatcaacgaaaagtgagttttcaagtgagca |
16535052 |
T |
|
| Q |
122 |
aggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgt |
187 |
Q |
| |
|
||||||||| || |||| |||||||||| |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
16535051 |
aggagttgctttcttaaatcttcactttgcggccattttgatcgcgaaactaacaccgtcattttgt |
16534985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 187
Target Start/End: Original strand, 16630511 - 16630677
Alignment:
| Q |
23 |
cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgc-gaaaaatcaacggaaagtgagttttcaagtgagca |
121 |
Q |
| |
|
||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||| || | |||||||||| |||||||||||||||||||||| |
|
|
| T |
16630511 |
cttttgtccccgagccagatttggcatcagagctggttacgatacctcggagttgagtttgcgcgggaaaatcaacgaaaagtgagttttcaagtgagca |
16630610 |
T |
|
| Q |
122 |
aggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgt |
187 |
Q |
| |
|
||||||||| || |||| |||||||||| |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
16630611 |
aggagttgctttcttaaatcttcactttgcggccattttgatcgcgaaactaacaccgtcattttgt |
16630677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 124 - 265
Target Start/End: Complemental strand, 3053565 - 3053423
Alignment:
| Q |
124 |
gagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaagtct |
222 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||||||||||| |||||||| |||||||||||||| ||||||| || |||||||||||||||||| | |
|
|
| T |
3053565 |
gagttgccttcgtaaaacttcactttgcggccattttgttcgctaaactaacatcgtcattttgtttgggaagtgaggaaaacccttggttaacaagttt |
3053466 |
T |
|
| Q |
223 |
tcaccaccaacaaaaccaccactcacaaccacaatctttacca |
265 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
3053465 |
tcaccaccaacaaaaccaccactcaccaccacaatcttcacca |
3053423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 3932873 - 3933021
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagct-ggttacgatacctcggagttgagtttgtgcga-aaaatcaacggaaagtgagttt |
110 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |
|
|
| T |
3932873 |
tctacctttccttttgtccctgagccagatttggcatcagagcttggttacgatacctcggagttgagtttgcgcgggaaaatcaacgaaaagtgagttt |
3932972 |
T |
|
| Q |
111 |
tcaagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattt |
158 |
Q |
| |
|
|||||||||||||||||||| || |||| |||||||||| ||| |||| |
|
|
| T |
3932973 |
tcaagtgagcaaggagttgctttcttaaatcttcactttgcggctattt |
3933021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 21769077 - 21768933
Alignment:
| Q |
31 |
cctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagttttcaagtgagcaaggagttg |
129 |
Q |
| |
|
||||||| | ||||| | ||||||| |||||||||||| ||||||||||||| | ||| |||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21769077 |
cctgagcaaaatttgacgtcagagcaagttacgataccttggagttgagtttgagagaagaaataaacggaaagtgagttttcaagcgagcaaggagttg |
21768978 |
T |
|
| Q |
130 |
cctt-tgtaaacttcactttgtggccattttgttcgcaaaactaac |
174 |
Q |
| |
|
| || | |||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
21768977 |
ctttctcaaaacttcactttgtagcca-tttgttcgcgaaactaac |
21768933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 65 - 158
Target Start/End: Original strand, 3933033 - 3933130
Alignment:
| Q |
65 |
tacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
|||||| |||||| ||||| ||||| ||||||||||| ||||||||||||||| |||||||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
3933033 |
tacctcagagttgtgtttgagcgaagaaatcaacggagagtgagttttcaagtgagagcaaggagttgctttctcaaaacttcactttgcggccattt |
3933130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 16534974 - 16534903
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
16534974 |
aaatcaacggaaagtgagttttcaagtgagagtaaggagttgctttctcaaaacttcactttgcggccattt |
16534903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 16630688 - 16630759
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
16630688 |
aaatcaacggaaagtgagttttcaagtgagagtaaggagttgctttctcaaaacttcactttgcggccattt |
16630759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 19787127 - 19787198
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
19787127 |
aaatcaacggaaagtgagttttcaagtgagagtaaggagttgctttctcaaaacttcactttgcggccattt |
19787198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 8733334 - 8733263
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||| ||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
8733334 |
aaatcaatggaaagtgagttttcaagtgagagtaaggagttgctttctcaaaacttcactttgcggccattt |
8733263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 268
Target Start/End: Complemental strand, 42277808 - 42277551
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
42277808 |
tctacctttccttttgtccctgagccagatttgatatcagagctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacggaaagtgagtttt |
42277709 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttg |
210 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||| |||| ||| |
|
|
| T |
42277708 |
caagtgagcaaggagttgccttagtaaaacttcactttgcggccattttgtttgcaaaactaaccctgtcattttgtttgggaagtgaagaaaaccgttg |
42277609 |
T |
|
| Q |
211 |
gttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttaccatat |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42277608 |
gttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttaccatat |
42277551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 31487043 - 31487194
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcg-aaaaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
31487043 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacggaaagtgagtttt |
31487142 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttg-taaacttcactttgtggccattttgtt |
162 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
31487143 |
caagagagcaaggagttgcctttgttaaacttcactttgcggccattttgtt |
31487194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 31487186 - 31487263
Alignment:
| Q |
180 |
cattttgtttgtgaagtgaagagaacccttggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatc |
258 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
31487186 |
cattttgtttaggaagtgaagaaaacccttggttaacaa-tcttcaccacccacaaaaccaccactcatcaccacaatc |
31487263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 265
Target Start/End: Original strand, 29488 - 29742
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||| || ||||| ||||||||||||| ||||| |
|
|
| T |
29488 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggcgttgagtttgagcaaaaaaatcaacggaaagtgggtttt |
29587 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttg |
210 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||| ||||||||||||||| |||||||||| |||||||| |
|
|
| T |
29588 |
caagtgagcaaggacttgcctttgtaaaacttcactttacggccattttgttcgtgaaactaacaccgtcattttgtttgggaagtgaagaaaacccttg |
29687 |
T |
|
| Q |
211 |
gttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttacca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29688 |
gttaacaagtcttcaccaccaacaaaaccaccactcaccaccacaatcttcacca |
29742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1361 (Bit Score: 166; Significance: 7e-89; HSPs: 1)
Name: scaffold1361
Description:
Target: scaffold1361; HSP #1
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 114 - 335
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
114 |
tctacctttccttttgtccctgagccagatttggtatcagagctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacgaaaagtgagtttt |
213 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
214 |
caagtgagcaaggagttgcctttgtaaaacttcactttgcggccattttgttcgtaaaactaaccccgtcattttgtttgggaagtgaagaaaacccttg |
313 |
T |
|
| Q |
211 |
gttaacaagtcttcaccaccaa |
232 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
314 |
gttaacaagtcttcaccaccaa |
335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 23 - 247
Target Start/End: Original strand, 37208054 - 37208279
Alignment:
| Q |
23 |
cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcg-aaaaatcaacggaaagtgagttttcaagtgagca |
121 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
37208054 |
cttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacggaaagtgagttttcaagtgcgca |
37208153 |
T |
|
| Q |
122 |
aggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaagt |
220 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
37208154 |
aggagttgcctttgtaaaacttcactttgcggccattttgttcgcgaaactaacaccaccattttgtttgggaagtgaagaaaacccttggttaacaa-t |
37208252 |
T |
|
| Q |
221 |
cttcaccaccaacaaaaccaccactca |
247 |
Q |
| |
|
|||||||||| |||||||||||||||| |
|
|
| T |
37208253 |
cttcaccacccacaaaaccaccactca |
37208279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 187
Target Start/End: Complemental strand, 11852201 - 11852025
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcg-aaaaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
11852201 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttatgatacctcggagttgagtttgagcgaaaaaataaacggaaagtgagttta |
11852102 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgt |
187 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
11852101 |
caagtgagcaaggagttgcctttgtgaaacttcactttgcggccattttgatcgcaaaactaacaccgtcattttgt |
11852025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 158
Target Start/End: Original strand, 15469229 - 15469379
Alignment:
| Q |
10 |
ttttctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagt |
108 |
Q |
| |
|
|||| ||| ||| ||||||| ||||||||| | ||||||||||||| ||||| |||||||| |||||||||||| | ||| |||||||| || || | | |
|
|
| T |
15469229 |
ttttttacctttccttttgtccctgagccagaattggcatcagagcaggttatgatacctcagagttgagtttgagagaagaaatcaacaaaaggtcaat |
15469328 |
T |
|
| Q |
109 |
tttcaagtgagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||||||| ||| |||||| || | |||||||||||||||| ||||| |
|
|
| T |
15469329 |
tttcaagtgagtaagaagttgctttctcaaaacttcactttgtggtcattt |
15469379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 119
Target Start/End: Complemental strand, 11852014 - 11851985
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagtgag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
11852014 |
aaatcaacggaaagtgagttttcaagtgag |
11851985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 45162338 - 45162570
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagc-tggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagttt |
110 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||||||||||| | |||| ||||||||||||||||||| |||||||||| |||||| ||||||||||| |
|
|
| T |
45162338 |
tctacctttccttttgtccctgagccagatttggcatcagagcctagttatgatacctcggagttgagttcgtgcgaaaaaatcaacgtaaagtgagttt |
45162437 |
T |
|
| Q |
111 |
tcaagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaaccctt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||| |
|
|
| T |
45162438 |
tcaagtgagcaaggagttgcctttgtaaaacttcactttgcggccattttgttcgcaaaactaacaccgctattttgtttgggaagtgaagaaaaccctt |
45162537 |
T |
|
| Q |
210 |
ggttaacaagtcttcaccaccaacaaaaccacca |
243 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
|
|
| T |
45162538 |
ggttaacaa-tcttcaccaccaacaaaaccacca |
45162570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 265
Target Start/End: Complemental strand, 42470627 - 42470432
Alignment:
| Q |
73 |
agttgagtttgtgcgaaaaa--tcaacggaaagtgagttttcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaa |
169 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |
|
|
| T |
42470627 |
agttgagtttgagcgaaaaaaatcaacggaaagtgagttttcaaaagagcaaggagttgcctttgtgaaacttcactttgcggccattttgttcgtgaaa |
42470528 |
T |
|
| Q |
170 |
ctaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttacca |
265 |
Q |
| |
|
||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
42470527 |
ctagcaccgtcattttgtttggaaagtgaagaaaacccttggttaacaagtcttcaccaccaacaaaattaccgctcaccaccacaatcttcacca |
42470432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 13774310 - 13774460
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaa--atcaacggaaagtgagttt |
110 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
13774310 |
tctacctttccttttgtccctgagccagatttggtatcagagctggttacgatacctcgaagttgaggttgagcgaaaaaaatcaacggaaagtgagttt |
13774409 |
T |
|
| Q |
111 |
tcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttg |
160 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
13774410 |
tcaagtgagcaaggagttgcctttgtgaaacttcactttgcggccattttg |
13774460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 42470794 - 42470634
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
42470794 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgataccacggagttgagtttgagcgaagaaatcaacggaaagtgagtttt |
42470695 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctt-tgtaaacttcactttgtggccattttgttcgcaaaacta |
172 |
Q |
| |
|
||||||||||||| ||||| || | ||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
42470694 |
caagtgagcaaggtgttgctttcttaaaacttcactttgcggcca-tttgttcgcgaaacta |
42470634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 24908099 - 24907984
Alignment:
| Q |
16 |
acattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagttttcaa |
114 |
Q |
| |
|
|||||| ||||||| | | ||||| |||||| || ||||| |||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||| || |
|
|
| T |
24908099 |
acatttccttttgtccttaagccaaatttggtattagagcaggttacgatacctcagagttgagtttgagcgaagaaatcaacagaaagtgagtttttaa |
24908000 |
T |
|
| Q |
115 |
gtgagcaaggagttgc |
130 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24907999 |
gtgagcaaggagttgc |
24907984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 13774467 - 13774517
Alignment:
| Q |
137 |
aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgt |
187 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
13774467 |
aaacttcactttgcggccattttgatcgcgaaactaacaccgtcattttgt |
13774517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 13774528 - 13774599
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
13774528 |
aaatcaacggaaagtgagttttcaagtgagagtaaggagttgctttctcaaaacttcactttgcggccattt |
13774599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 88505 - 88735
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagc-tggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagttt |
110 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||| || ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
88505 |
tctacctttccttttgtccctgagccagatttggtattagagcctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacggaaagtgagttt |
88604 |
T |
|
| Q |
111 |
tcaagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaaccctt |
209 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||| |||||||||| |||||||||| ||||||| |
|
|
| T |
88605 |
tcaagtgagcaaggagtttcctttgtaaaacttcactttgcggccattttgttcgcaaaactaacaccgctattttgtttgggaagtgaagaaaaccctt |
88704 |
T |
|
| Q |
210 |
ggttaacaagtcttcaccaccaacaaaaccac |
241 |
Q |
| |
|
||||||||| | |||||||||||||||||||| |
|
|
| T |
88705 |
ggttaacaa-ttttcaccaccaacaaaaccac |
88735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 24 - 260
Target Start/End: Original strand, 20642346 - 20642584
Alignment:
| Q |
24 |
ttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagttttcaagtgagcaa |
122 |
Q |
| |
|
|||||| ||||||| | | ||| || || ||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20642346 |
ttttgtccctgagcaagaattgacaccaaagctggttacgatacctcggagtcgagttttagcgaaaaaatcaacggaaagtgagttttcaagtgagcaa |
20642445 |
T |
|
| Q |
123 |
ggagttgcctttgtaaa-cttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaagtc |
221 |
Q |
| |
|
|||||||| | || ||| |||||||||| |||||||||||||| |||||||| | ||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
20642446 |
ggagttgcatgtggaaaacttcactttgcagccattttgttcgcgaaactaacactgtcattttgtttgggaagtgaagaaaacccttggttaacaagtc |
20642545 |
T |
|
| Q |
222 |
ttcaccaccaacaaaaccaccactcacaaccacaatctt |
260 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20642546 |
ttcaccaccaacaaaaccaccactcaccaccacaatctt |
20642584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 65 - 265
Target Start/End: Complemental strand, 18966125 - 18965923
Alignment:
| Q |
65 |
tacctcggagttgagtttgtgcgaaaaa-tcaacggaaagtgagttttcaagtgagcaaggagttgcctttgtaaa-cttcactttgtggccattttgtt |
162 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||| |||||||||||| |
|
|
| T |
18966125 |
tacctcggagttgagttatagcgaaaaaatcaacggaaagtgagttttcaagtgagcatggagttgcctatggaaaacttcactttgcggccattttgtt |
18966026 |
T |
|
| Q |
163 |
cgcaaaactaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatcttta |
262 |
Q |
| |
|
|| |||||||| ||||||||||| ||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
18966025 |
cgggaaactaacaccgtcattttgattgggaagtgaagaaaactcttggttaacaagtcttcaccaccaacaaaaccaccactcaccaccacaatcttca |
18965926 |
T |
|
| Q |
263 |
cca |
265 |
Q |
| |
|
||| |
|
|
| T |
18965925 |
cca |
18965923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 4530994 - 4531144
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaa--atcaacggaaagtgagttt |
110 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
4530994 |
tctacctttccttttgtccctgagccagatttggtatcagagctggttacgatacctcgaagttgaggttgagcgaaaaaaatcaacggaaagtgagttt |
4531093 |
T |
|
| Q |
111 |
tcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttg |
160 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
4531094 |
tcaagtgagcaaggagttgcctttgtgaaacttcactttgcggccattttg |
4531144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 159
Target Start/End: Original strand, 1701344 - 1701483
Alignment:
| Q |
23 |
cttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaa-gtgagttttcaagtgagc |
120 |
Q |
| |
|
||||||| ||||| ||| ||||| ||||||||| ||| |||||||| ||||| |||||| ||||| ||||||||| ||| || ||||||||||||| | |
|
|
| T |
1701344 |
cttttgtccctgaaccagatttgacatcagagcatattaagatacctcagagttcagtttgagcgaagaaatcaacgaaaaagtaagttttcaagtgaac |
1701443 |
T |
|
| Q |
121 |
aaggagttgccttt-gtaaacttcactttgtggccatttt |
159 |
Q |
| |
|
|||||||||| ||| ||||||||||||| |||||||| |
|
|
| T |
1701444 |
aaggagttgcttttccaaaacttcactttgcagccatttt |
1701483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 18966206 - 18966157
Alignment:
| Q |
43 |
ttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaa |
92 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
18966206 |
ttggcagcagaactggttacgatacctcggagttgagtttgagcgaaaaa |
18966157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 137 - 187
Target Start/End: Original strand, 4531151 - 4531201
Alignment:
| Q |
137 |
aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgt |
187 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||| |||||||||||| |
|
|
| T |
4531151 |
aaacttcactttgcggccattttgatcgcgaaactaacaccgtcattttgt |
4531201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 4531212 - 4531283
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagt--gagcaaggagttgcctt-tgtaaacttcactttgtggccattt |
158 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||||| || | ||||||||||||| |||||||| |
|
|
| T |
4531212 |
aaatcaacggaaagtgagttttcaagtgagagtaaggagttgctttctcaaaacttcactttgcggccattt |
4531283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 201
Target Start/End: Original strand, 26306778 - 26306889
Alignment:
| Q |
91 |
aatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgttt |
189 |
Q |
| |
|
|||||| ||||||| |||||||||||||| || | | || || || |||||||||||| ||| ||||||||||| | |||||| || ||||||||||| |
|
|
| T |
26306778 |
aatcaatggaaagtaagttttcaagtgagaaaaaaatcgcgttcgtgaaacttcactttacggctattttgttcgcgacactaacaccttcattttgttt |
26306877 |
T |
|
| Q |
190 |
gtgaagtgaaga |
201 |
Q |
| |
|
| ||| |||||| |
|
|
| T |
26306878 |
gggaaatgaaga |
26306889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 265
Target Start/End: Original strand, 4877317 - 4877512
Alignment:
| Q |
73 |
agttgagtttgtgcgaaaaa--tcaacggaaagtgagttttcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaa |
169 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||| ||| |
|
|
| T |
4877317 |
agttgagtttgagcgaaaaaaatcaacggaaagtgagttttcaaaagagcaaggagttgcctttgtgaaacttcactttgcggccattttgttcgtgaaa |
4877416 |
T |
|
| Q |
170 |
ctaaccccgtcattttgtttgtgaagtgaagagaacccttggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatctttacca |
265 |
Q |
| |
|
||| | ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
4877417 |
ctagcaccgtcattttgtttggaaagtgaagaaaacccttggttaacaagtcttcaccaccaacaaaattaccgctcaccaccacaatcttcacca |
4877512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 36379491 - 36379340
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcga-aaaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
36379491 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaaaaaatcaacggaaagtgagtttt |
36379392 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctttg-taaacttcactttgtggccattttgtt |
162 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
36379391 |
caagagagcaaggagttgcctttgttaaacttcactttgcggccattttgtt |
36379340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 172
Target Start/End: Original strand, 4877150 - 4877310
Alignment:
| Q |
13 |
tctacattttcttttgttcctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagtttt |
111 |
Q |
| |
|
||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4877150 |
tctacctttccttttgtccctgagccagatttggcatcagagctggttacgataccacggagttgagtttgagcgaagaaatcaacggaaagtgagtttt |
4877249 |
T |
|
| Q |
112 |
caagtgagcaaggagttgcctt-tgtaaacttcactttgtggccattttgttcgcaaaacta |
172 |
Q |
| |
|
||||||||||||| ||||| || | ||||||||||||| ||||| ||||||||| |||||| |
|
|
| T |
4877250 |
caagtgagcaaggtgttgctttcttaaaacttcactttgcggcca-tttgttcgcgaaacta |
4877310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 36379348 - 36379271
Alignment:
| Q |
180 |
cattttgtttgtgaagtgaagagaacccttggttaacaagtcttcaccaccaacaaaaccaccactcacaaccacaatc |
258 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
36379348 |
cattttgtttaggaagtgaagaaaacccttggttaacaa-tcttcaccacccacaaaaccaccactcatcaccacaatc |
36379271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 201
Target Start/End: Complemental strand, 7939104 - 7938992
Alignment:
| Q |
90 |
aaatcaacggaaagtgagttttcaagtgagcaaggagttgcctttgt-aaacttcactttgtggccattttgttcgcaaaactaaccccgtcattttgtt |
188 |
Q |
| |
|
|||| |||||||||||||||||| |||||| ||||||||| | |||| |||| |||||||| | ||||||||||| ||||| ||| ||| ||| |||| |
|
|
| T |
7939104 |
aaataaacggaaagtgagttttccagtgagtaaggagttgtccttgtgaaacatcactttgcgcccattttgttcttaaaacaaacatcgttattatgtt |
7939005 |
T |
|
| Q |
189 |
tgtgaagtgaaga |
201 |
Q |
| |
|
|| ||||| |||| |
|
|
| T |
7939004 |
tgggaagttaaga |
7938992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 64134 - 64273
Alignment:
| Q |
32 |
ctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagttttcaagtgagcaaggagttgc |
130 |
Q |
| |
|
|||| ||| ||||| ||||| ||| ||||||| |||||| |||||||||||| ||||| |||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
64134 |
ctgatccaaatttgacatcaaagcaggttacgctacctcagagttgagtttgagcgaagaaatcaacggaa----cgttttcaagtaagcaaggatttgc |
64229 |
T |
|
| Q |
131 |
ctt-tgtaaacttcactttgtggccattttgttcgcaaaactaac |
174 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
64230 |
tttcacaaaacttcactttgcggcca-tttgttcgcgaaactaac |
64273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 71466 - 71605
Alignment:
| Q |
32 |
ctgagccatatttggcatcagagctggttacgatacctcggagttgagtttgtgcgaa-aaatcaacggaaagtgagttttcaagtgagcaaggagttgc |
130 |
Q |
| |
|
|||| ||| ||||| ||||| ||| ||||||| |||||| |||||||||||| ||||| |||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
71466 |
ctgatccaaatttgacatcaaagcaggttacgctacctcagagttgagtttgagcgaagaaatcaacggaa----cgttttcaagtaagcaaggatttgc |
71561 |
T |
|
| Q |
131 |
ctt-tgtaaacttcactttgtggccattttgttcgcaaaactaac |
174 |
Q |
| |
|
|| ||||||||||||| ||||| ||||||||| |||||||| |
|
|
| T |
71562 |
tttcacaaaacttcactttgcggcca-tttgttcgcgaaactaac |
71605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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