View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_222 (Length: 279)
Name: NF7829A_low_222
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_222 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 264
Target Start/End: Original strand, 55374568 - 55374828
Alignment:
| Q |
4 |
gaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaagtaggacaagcacgtcttgtgaaattgtcatgcttgg |
103 |
Q |
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| T |
55374568 |
gaagttaattagtgtttacaatagaaagctcctcagaaatctatatatttggacggcttttaagtaggacaagcacgtcttgtgaaattctcatgcttgg |
55374667 |
T |
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| Q |
104 |
attcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttctaaatatttaacaaatttgtcaattatgctagaagttacaatg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
55374668 |
attcaatataataacttatatttaagtcaaaagctaagtaaaattagaatttagttttaaatatttaactaatttgtcaattatgctagaagttacaatg |
55374767 |
T |
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| Q |
204 |
gagcctagtttagattaactttaattcgtttatgaaaacctatcaacttacataagtatat |
264 |
Q |
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| T |
55374768 |
gagcctaatttagattaactttaattcgtttatgaaaacttatcaacttacataagtatat |
55374828 |
T |
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