View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_223 (Length: 279)
Name: NF7829A_low_223
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_223 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0039 (1 HSPs) |
| |
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| [»] scaffold0002 (1 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 30745404 - 30745546
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtga |
236 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30745404 |
tctaacttggggggaagctcaaaagggatattaaagtgaagattaaggttgcttttgaaggttaaggtaagagggaaagtttatattttccattaagtga |
30745503 |
T |
|
| Q |
237 |
ttatgagtgatatggtagttatgggttatgtttaattaagtga |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30745504 |
ttatgagtgatatggtagttatgggttatgtttaattaagtga |
30745546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 30745278 - 30745348
Alignment:
| Q |
11 |
aatatacaagagaataatctttgtgaaaatatggttaagagctcatttgttcattttgacaaaataaacat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30745278 |
aatatacaagagaataatctttgtgaaaatatggttaagagctcatttgttcattttgacaaaatagacat |
30745348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 19536658 - 19536800
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtga |
236 |
Q |
| |
|
|||| |||||||| || ||||| | ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
19536658 |
tctagcttgggggaaacctcaatagggagattaaaatgaagattaaagttgcttttgaagattaaggtaagaggaaaagtttatatttaccattaagtga |
19536757 |
T |
|
| Q |
237 |
ttatgagtgatatggtagttatgggttatgtttaattaagtga |
279 |
Q |
| |
|
|||||||||||| || |||| | ||||||||| |||||||| |
|
|
| T |
19536758 |
ttatgagtgatagagtggttaagagttatgtttggttaagtga |
19536800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 279
Target Start/End: Original strand, 7175145 - 7175277
Alignment:
| Q |
146 |
gggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtg |
245 |
Q |
| |
|
|||| |||||||| | |||||||| | | |||||||| | |||||| || ||| ||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
7175145 |
ggggaaagctcaagagggagattagactcaagattaatgctgctttgga-ggtcaaggtaagaggaaaagtttatatttaccattaagtgattatgaatg |
7175243 |
T |
|
| Q |
246 |
atatggtagttatgggttatgtttaattaagtga |
279 |
Q |
| |
|
||| ||||||||| || ||||||| |||| |||| |
|
|
| T |
7175244 |
atagggtagttataggatatgtttgattatgtga |
7175277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 142 - 277
Target Start/End: Original strand, 15850083 - 15850218
Alignment:
| Q |
142 |
cttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtgattatg |
241 |
Q |
| |
|
|||||||| |||||||| | | |||||| | | |||||||| |||||||||||| ||| | |||||||||||||| |||||| ||| |||||||||||| |
|
|
| T |
15850083 |
cttgggggaaagctcaagacgaagattagagtaaagattaaagttgcttttgaaagtttaagtaagaggaaaagtgtatattcaccactaagtgattatg |
15850182 |
T |
|
| Q |
242 |
agtgatatggtagttatgggttatgtttaattaagt |
277 |
Q |
| |
|
||||| | |||||||||||||| |||| ||||||| |
|
|
| T |
15850183 |
agtgacagagtagttatgggttaggtttgattaagt |
15850218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 269
Target Start/End: Complemental strand, 19036439 - 19036320
Alignment:
| Q |
151 |
aagctcaaaatggagattaaaatgaagattaaggtt-gcttttgaa-ggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtgata |
248 |
Q |
| |
|
|||||||| | ||||| || | |||||||||| ||| ||||||||| |||||||||||||||||| ||||||||| ||||| || |||||||||||||| |
|
|
| T |
19036439 |
aagctcaagagggagagtagattgaagattaaagttagcttttgaaaggttaaggtaagaggaaa-gtttatattcaccatttagagattatgagtgata |
19036341 |
T |
|
| Q |
249 |
tggtagttatgggttatgttt |
269 |
Q |
| |
|
|| ||||||||| |||||| |
|
|
| T |
19036340 |
gagtggttatgggtcatgttt |
19036320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 15849950 - 15850015
Alignment:
| Q |
8 |
aataatatacaagagaataatctttgtgaaaatatggttaagagctcatttgttcattttgacaaaa |
74 |
Q |
| |
|
|||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||||||| |||| |
|
|
| T |
15849950 |
aatagtatataagagaatagtctttgtgaaatta-ggttaagagctcatttgttcattttgagaaaa |
15850015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 278
Target Start/End: Complemental strand, 9259795 - 9259654
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtga |
236 |
Q |
| |
|
|||| |||||||| |||||||| | |||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9259795 |
tctagcttgggggaaagctcaagagaaagattagagtgaagattacagttgcttttggaggttaaggtaagaggaaaagtttatatttaccattaagtga |
9259696 |
T |
|
| Q |
237 |
ttatgagtgatatggtagttatgggttatgtttaattaagtg |
278 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
9259695 |
ttatgagtgatagagtagttatgagttatgtttgattaagtg |
9259654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 9310499 - 9310640
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtga |
236 |
Q |
| |
|
|||| |||||||| |||||||| | |||||| | ||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
9310499 |
tctagcttgggggaaagctcaagagaaagattagagtgaagattacagttgcttttggaggttaaggtaagaggaaaagtttatatttaccattaagtga |
9310598 |
T |
|
| Q |
237 |
ttatgagtgatatggtagttatgggttatgtttaattaagtg |
278 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||| |||||||| |
|
|
| T |
9310599 |
ttatgagtgatagagtagttatgagttatgtttgattaagtg |
9310640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Complemental strand, 9259920 - 9259866
Alignment:
| Q |
13 |
tatacaagagaataatctttgtgaaaatatggttaagagctcatttgttcatttt |
67 |
Q |
| |
|
|||| ||||||||||||||||||||||| | | ||||| ||||||||||||||| |
|
|
| T |
9259920 |
tatataagagaataatctttgtgaaaattagatcaagagttcatttgttcatttt |
9259866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 9310374 - 9310428
Alignment:
| Q |
13 |
tatacaagagaataatctttgtgaaaatatggttaagagctcatttgttcatttt |
67 |
Q |
| |
|
|||| ||||||||||||||||||||||| | | ||||| ||||||||||||||| |
|
|
| T |
9310374 |
tatataagagaataatctttgtgaaaattagatcaagagttcatttgttcatttt |
9310428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 11229979 - 11230050
Alignment:
| Q |
197 |
gttaaggtaagaggaaaagtttatattttccattaagtgattatgagtgatatggtagttatgggttatgttt |
269 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||| || |||||||||||||| || |||||| || |||||| |
|
|
| T |
11229979 |
gttaaggtaagaggaaa-gtttatattcaccatttagagattatgagtgatagagtggttatgagtcatgttt |
11230050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 137 - 279
Target Start/End: Original strand, 23276462 - 23276604
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtga |
236 |
Q |
| |
|
|||| |||||||| ||| |||| | |||||| | | |||||||| | ||||||||||||| ||||||||| ||||| |||||||||| ||||||||||| |
|
|
| T |
23276462 |
tctagcttgggggaaagatcaagagggagatcagagtgaagatttaagttgcttttgaagattaaggtaactggaaatgtttatatttaccattaagtga |
23276561 |
T |
|
| Q |
237 |
ttatgagtgatatggtagttatgggttatgtttaattaagtga |
279 |
Q |
| |
|
|||||||||||| |||||||||||| |||||| ||||||||| |
|
|
| T |
23276562 |
ttatgagtgatagagtagttatgggtcatgtttgattaagtga |
23276604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 23276350 - 23276412
Alignment:
| Q |
13 |
tatacaagagaataatctttgtgaaaat-atggttaagagctcatttgttcattttgacaaaa |
74 |
Q |
| |
|
|||| ||||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||| |
|
|
| T |
23276350 |
tatataagagaatagtctttgtgaaaattatggttaagagatcatttgttcattttgagaaaa |
23276412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 137 - 237
Target Start/End: Complemental strand, 30215330 - 30215230
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtga |
236 |
Q |
| |
|
||||||||||||| ||||| || | |||||||||| | |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
30215330 |
tctaacttgggggaaagcttaagagggagattaaagtaaagattaaagttgcttttgaaggttaaggtaagaggaaaaatttatatttatcattaagtga |
30215231 |
T |
|
| Q |
237 |
t |
237 |
Q |
| |
|
| |
|
|
| T |
30215230 |
t |
30215230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 177 - 279
Target Start/End: Original strand, 30216132 - 30216233
Alignment:
| Q |
177 |
gattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtgatatggtagttatgggttatgtttaattaag |
276 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||| |||||||||||||| ||||||||||||||| |||| | | |||||||||||||||||| |||||| |
|
|
| T |
30216132 |
gattaaagttgcttttgaaagttaaggtaagagtaaaagtttatatttaccattaagtgattataagtggca-gatagttatgggttatgtttgattaag |
30216230 |
T |
|
| Q |
277 |
tga |
279 |
Q |
| |
|
||| |
|
|
| T |
30216231 |
tga |
30216233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 269
Target Start/End: Complemental strand, 22260886 - 22260764
Alignment:
| Q |
146 |
gggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtg |
245 |
Q |
| |
|
|||| |||||||| | ||||| || ||||||||||||| | ||||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||| |
|
|
| T |
22260886 |
ggggaaagctcaagagggagagtagaatgaagattaagttagcttttgaaggttaatgtaagagg-aaagtttatattcaccatttagagattatgagtg |
22260788 |
T |
|
| Q |
246 |
atatggtagttatgggttatgttt |
269 |
Q |
| |
|
||| || ||||||||| |||||| |
|
|
| T |
22260787 |
atagagtggttatgggtcatgttt |
22260764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 146 - 269
Target Start/End: Original strand, 22267613 - 22267735
Alignment:
| Q |
146 |
gggggaagctcaaaatggagattaaaatgaagattaaggttgcttttgaaggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtg |
245 |
Q |
| |
|
|||| |||||||| | ||||| || ||||||||||||| | ||||||||||||||| |||||||| |||||||||||| ||||| || ||||||||||| |
|
|
| T |
22267613 |
ggggaaagctcaagagggagagtagaatgaagattaagttagcttttgaaggttaatgtaagagg-aaagtttatattcaccatttagagattatgagtg |
22267711 |
T |
|
| Q |
246 |
atatggtagttatgggttatgttt |
269 |
Q |
| |
|
||| || ||||||||| |||||| |
|
|
| T |
22267712 |
atagagtggttatgggtcatgttt |
22267735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 279
Target Start/End: Original strand, 30058938 - 30059019
Alignment:
| Q |
199 |
taaggtaagaggaaaagtttatattttccattaagtgattatgagtg--atatggtagttatgggttatgtttaattaagtga |
279 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||| |||||||| ||||| |||| || ||||||||||||||||||||| |||| |
|
|
| T |
30058938 |
taaggtaagaagaaa-gtttatattcaccatttagtgattaagagtgatatatagtggttatgggttatgtttaattatgtga |
30059019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 279
Target Start/End: Complemental strand, 22423 - 22280
Alignment:
| Q |
137 |
tctaacttggggggaagctcaaaatggagattaaaatgaagattaaggtt-gcttttgaagg-ttaaggtaagaggaaaagtttatattttccattaagt |
234 |
Q |
| |
|
|||| |||||||| ||||| | || ||||| || | |||||||||| ||| | ||||||||| |||||||||||||||| ||||||||| ||||| || |
|
|
| T |
22423 |
tctagcttgggggaaagcttataagggagagtagattgaagattaaagttaggttttgaagggttaaggtaagaggaaa-gtttatattcaccatttaga |
22325 |
T |
|
| Q |
235 |
gattatgagtgatatggtagttatgggttatgtttaattaagtga |
279 |
Q |
| |
|
|||||||||||||| || ||||||||| |||||| |||| |||| |
|
|
| T |
22324 |
gattatgagtgatagagtggttatgggtcatgtttgattatgtga |
22280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 366234 - 366315
Alignment:
| Q |
142 |
cttggggggaagctcaaaatggagattaaaatgaagattaaggttgcttttg-aaggttaaggtaagaggaaaagtttatatt |
223 |
Q |
| |
|
|||||||| |||||||| | |||||||| | ||||| |||| || ||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
366234 |
cttgggggaaagctcaagagggagattagattgaaggttaaagtagcttttggaaggttaaggtaagagg-aaagtttatatt |
366315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 1272155 - 1272240
Alignment:
| Q |
163 |
gagattaaaatgaagattaaggttgcttttgaa-ggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtgata |
248 |
Q |
| |
|
||||||| | |||||||| | |||||||||||| ||||||||||||||| |||||||||||| || || || |||||||||||||| |
|
|
| T |
1272155 |
gagattagagtgaagatttaagttgcttttgaagggttaaggtaagagg-aaagtttatattcaccgtttagagattatgagtgata |
1272240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 3257298 - 3257222
Alignment:
| Q |
173 |
tgaagattaaggtt-gcttttg-aaggttaaggtaagaggaaaagtttatattttccattaagtgattatgagtgat |
247 |
Q |
| |
|
|||||||||| ||| ||||||| ||||||||||||||||| ||||||||| || ||||| || ||||| ||||||| |
|
|
| T |
3257298 |
tgaagattaaagttagcttttggaaggttaaggtaagagggaaagtttatcttcaccatttagagattacgagtgat |
3257222 |
T |
|
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