View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_231 (Length: 273)
Name: NF7829A_low_231
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_231 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 45682080 - 45681878
Alignment:
| Q |
18 |
cacaaaaacacacacacatatataaacaatcccagctcagcattgataagacaaattaattataatatactgtacagcatattatacaagtgattttgga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
45682080 |
cacaaaaacacacacacatatataaacaatcccagctcagcattgataagacaaattaattataatatactgtacagcatattgtacaagtgattttgga |
45681981 |
T |
|
| Q |
118 |
ttagatttgtctcaactattgtctgtctt-----gattattaggacggttcaatttgagaacttgacatacctattgactcctaccttcaatgactaagg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45681980 |
ttagatttgtctcaactattgtctgtcttgatttgattattaggacggttcaatttgagaacttgacatacctattgactcctaccttcaatgactaagg |
45681881 |
T |
|
| Q |
213 |
ttc |
215 |
Q |
| |
|
||| |
|
|
| T |
45681880 |
ttc |
45681878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 239 - 268
Target Start/End: Complemental strand, 45681824 - 45681795
Alignment:
| Q |
239 |
cagtccttcccatacatgcatgtttcttgt |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
45681824 |
cagtccttcccatacatgcatgtttcttgt |
45681795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University