View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_234 (Length: 271)
Name: NF7829A_low_234
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_234 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 4512646 - 4512911
Alignment:
| Q |
1 |
ttcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaact |
100 |
Q |
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| T |
4512646 |
ttcttctatctctgcagggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaact |
4512745 |
T |
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| Q |
101 |
tgtagatgctgttaaagtacaatctctgtctcctattcgtccactnnnnnnnnnnnnnnnnnnntcggagagaaaagaagtttcaaatttttcacatttc |
200 |
Q |
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| T |
4512746 |
tgtagatgctgttaaagtacaatctctgtctcctattcgtccactcacacacaagcacacacactcggagagaaaagaagtttcaaatttttcacatttc |
4512845 |
T |
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| Q |
201 |
aatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaactt |
266 |
Q |
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| T |
4512846 |
aatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagggcaagggagaactt |
4512911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 43206699 - 43206652
Alignment:
| Q |
45 |
tcacttcaacatttcaagaagccatgggctcatgaacacgaacctgtt |
92 |
Q |
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| T |
43206699 |
tcacttcaacacttcaagaagccttgggctcatgaacacgagcctgtt |
43206652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 43432742 - 43432638
Alignment:
| Q |
16 |
agggtttgattgtgagttctcgcaaagaatcacttcaacatttcaagaagccatgggctcatgaacacgaacctgttgagaaacttgtagatgctgttaa |
115 |
Q |
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|||| |||||||| ||||| || ||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | || ||| | ||||||||||| |
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| T |
43432742 |
agggattgattgtcagttcccgtaaagaatcactccaacatttcaagaagccgtgggctcatgaacacgaacctgttaaaaaccttcttgatgctgttaa |
43432643 |
T |
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| Q |
116 |
agtac |
120 |
Q |
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|||| |
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| T |
43432642 |
tgtac |
43432638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 3533801 - 3533733
Alignment:
| Q |
183 |
tcaaatttttcacatttcaatgttttctttttcagcaaattaagccaacagtgttgattggaacatcagg |
252 |
Q |
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|||||||| ||| |||| ||||||||||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
3533801 |
tcaaatttctcatatttgaatgttttctttt-cggcaaattaagccaacagtgttgattggaatatcagg |
3533733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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