View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_236 (Length: 270)
Name: NF7829A_low_236
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_236 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 53620970 - 53620717
Alignment:
| Q |
16 |
gacacatgagccaagagttacacaatagccatgtgaataaaccacatagaaaaatgtaagctcgtctagattaaaggttggataacttaactaataacta |
115 |
Q |
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| T |
53620970 |
gacacatgagccaagagttacacaatagccatgtgaataaaccatatagaaaaatgtaagctcgtct-gattaaaggtttgataacttaactaataacta |
53620872 |
T |
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| Q |
116 |
gttcaaactaatgaattagaagttggagatcttaggtctaaacctaggtgnnnnnnnnnnnntaatctaacatatcgcttagaagttggtaaccatattt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||| ||||||||| |
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| T |
53620871 |
gttcaaactaatgaattagaagttggagatcttaggtctaaacttgggtgaaaaataaaaaataatctaacatattgcttagaagttggtcaccatattt |
53620772 |
T |
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| Q |
216 |
ctggacattcacactattggtccttattttagaattttgaacataaaaatggtga |
270 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53620771 |
ctggtcactcacactattggtccttattttagaattttgaacataaaaatggtga |
53620717 |
T |
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