View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_237 (Length: 270)
Name: NF7829A_low_237
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_237 |
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| [»] scaffold0542 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 4997372 - 4997635
Alignment:
| Q |
1 |
tcattatattggaagagaaaggtagaagatccatggctttctttcccacacatcagtctttgaactctcatggtgggtgttatcccccaatttcatcatg |
100 |
Q |
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| T |
4997372 |
tcattatattggaagagaaaggtagaagatccatggctttctttcccacacatcagtctttgaactctcatggtgggtgttatcccccaatttcatcatg |
4997471 |
T |
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| Q |
101 |
taatcaaaaataataatacatcatctccaattccaaaatctcacatctgtatgaagggtgtcttgcatcgccggttttgtgaagttccggatggtttaca |
200 |
Q |
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| T |
4997472 |
taaccaaaaataataatacatcatctccaattccaaaatctcacatctgtatgaagggtgccttgcatcgccggttttgtgaagttccggatggtttgca |
4997571 |
T |
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| Q |
201 |
ctaatttgtttctaaaattaatttttaattctattaaagaatgacgtggttgaatattcttgga |
264 |
Q |
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| T |
4997572 |
ctaatttgtttctaaaattaatttttaattctattaaagaatgacgtggctgaattttattgga |
4997635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 44541746 - 44541818
Alignment:
| Q |
8 |
attggaagagaaaggtagaagatccatggctttctttcccacacatcagtctttgaactctcatggtgggtgt |
80 |
Q |
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| T |
44541746 |
attggaactgaaaggtagaagatccaccgttttctttcccacacatcagtttttgaacactcttggtgggtgt |
44541818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 44541865 - 44541917
Alignment:
| Q |
108 |
aaataataatacatcatctccaattccaaaatctcacatctgtatgaagggtg |
160 |
Q |
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| T |
44541865 |
aaataataatacaccatccccaattccaaaatctcacatctctatgaagggtg |
44541917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 55160393 - 55160361
Alignment:
| Q |
208 |
gtttctaaaattaatttttaattctattaaaga |
240 |
Q |
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| T |
55160393 |
gtttctaaaattaatttttaattcaattaaaga |
55160361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 9362913 - 9362861
Alignment:
| Q |
108 |
aaataataatacatcatctccaattccaaaatctcacatctgtatgaagggtg |
160 |
Q |
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| T |
9362913 |
aaataataatacaccatccccaattccaaaatctcacatctctatgaagggtg |
9362861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Complemental strand, 9363032 - 9362960
Alignment:
| Q |
8 |
attggaagagaaaggtagaagatccatggctttctttcccacacatcagtctttgaactctcatggtgggtgt |
80 |
Q |
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| T |
9363032 |
attggaactgaaaggtagaagatccaccgttttctttcccacacatcagtttttgaacactcttggtgggtgt |
9362960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0542 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0542
Description:
Target: scaffold0542; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 206 - 242
Target Start/End: Complemental strand, 9862 - 9826
Alignment:
| Q |
206 |
ttgtttctaaaattaatttttaattctattaaagaat |
242 |
Q |
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| T |
9862 |
ttgtttttaaaattaatttttaattctattaaagaat |
9826 |
T |
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