View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_240 (Length: 268)
Name: NF7829A_low_240
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_240 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 261
Target Start/End: Original strand, 24142214 - 24142457
Alignment:
| Q |
18 |
gacatcaccctctttctcagctgcttcctgtagacgtttcttaaaatatgtcctaaaccagctgaaacgtgcatgagcaccctttgnnnnnnngacctgc |
117 |
Q |
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| T |
24142214 |
gacatcaccctctttctcagctgcttcctgtagatgtttcttaaaatatgtcctaaaccagctgaaacgtgcatgagcaccctttgtttttttgacctgc |
24142313 |
T |
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| Q |
118 |
tattagcctcgtccacatcataccctcagacctagaaataggaagtttatggtccaatatgagaccattaatgggggatgcagtagacaagacacatcat |
217 |
Q |
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| T |
24142314 |
tattagcctcgtccacatcataccctcagacctagaaataggaagtttatggtccaatatgagaccattaatgggggatgcagtagacaagacacatcat |
24142413 |
T |
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| Q |
218 |
caagtgttattgtcatctccctaattggaagattagagttagac |
261 |
Q |
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| T |
24142414 |
caagtgttattgtcatctccctaattggaagattgaagttagac |
24142457 |
T |
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 18954443 - 18954498
Alignment:
| Q |
195 |
atgcagtagacaagacacatcatcaagtgttattgtcatctccctaattggaagat |
250 |
Q |
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| T |
18954443 |
atgcagtagacatgacacatcatccagtatcattgtcatctccccaactggaagat |
18954498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 20216363 - 20216397
Alignment:
| Q |
204 |
acaagacacatcatcaagtgttattgtcatctccc |
238 |
Q |
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| T |
20216363 |
acaagacacatcatcaagtgtcattgtcatctccc |
20216397 |
T |
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