View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_241 (Length: 268)
Name: NF7829A_low_241
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_241 |
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| [»] chr5 (1 HSPs) |
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| [»] chr2 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 33561083 - 33560833
Alignment:
| Q |
18 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
117 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||| |
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| T |
33561083 |
catcaaatttactccgttttgacataggatccttgccttgtccttcacactgctttacttttaagctgagctccttcaccttttcatcgaacttgtactc |
33560984 |
T |
|
| Q |
118 |
tttcgactccagttcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
217 |
Q |
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||||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33560983 |
tttcgactccagttcattccatcgtacctgaaattggttctgttttgatttgaagtcctcaacttgtcttgcaaaatgcttctcttttgattcgagttct |
33560884 |
T |
|
| Q |
218 |
tcctcctttaatttaatgtccttcaattgttcttcgaattcctcctctttt |
268 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33560883 |
tcctcctttaatttaatgtccttcacttgttcttcgaattcctcctctttt |
33560833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 39389111 - 39389361
Alignment:
| Q |
18 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
117 |
Q |
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||||||||||| || |||||||| |||||| ||| |||| |||||| ||||||||||||||||| ||||||||||||||||| |||||||||| ||||| |
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| T |
39389111 |
catcaaatttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactc |
39389210 |
T |
|
| Q |
118 |
tttcgactccagttcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
217 |
Q |
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|||| |||||||||| | |||||||| | |||| | | || |||||||||||||||||||||||| ||| ||||||| || || |||||||||||| |
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| T |
39389211 |
tttcaactccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttttcaaatgctccttttgtgattcgagttcc |
39389310 |
T |
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| Q |
218 |
tcctcctttaatttaatgtccttcaattgttcttcgaattcctcctctttt |
268 |
Q |
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||||||||| |||||||| |||||| ||||||||| ||||||||||||||| |
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| T |
39389311 |
tcctcctttgatttaatgcccttcacttgttcttcaaattcctcctctttt |
39389361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 39161911 - 39161704
Alignment:
| Q |
18 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
117 |
Q |
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||||||||||| || ||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| | ||| |||||| ||| ||||| |
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| T |
39161911 |
catcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactc |
39161812 |
T |
|
| Q |
118 |
tttcgactccagttcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
217 |
Q |
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||||| ||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| | |
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| T |
39161811 |
tttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagttgt |
39161712 |
T |
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| Q |
218 |
tcctcctt |
225 |
Q |
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| |||||| |
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| T |
39161711 |
ttctcctt |
39161704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 39207283 - 39207490
Alignment:
| Q |
18 |
catcaaatttactccgctttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactc |
117 |
Q |
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||||||||||| || ||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||||||||||| | ||| |||||| ||| ||||| |
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| T |
39207283 |
catcaaatttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactc |
39207382 |
T |
|
| Q |
118 |
tttcgactccagttcatcccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttct |
217 |
Q |
| |
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||||| ||||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| | |
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| T |
39207383 |
tttcgtctccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttattttttgattcgagttgt |
39207482 |
T |
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| Q |
218 |
tcctcctt |
225 |
Q |
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| |||||| |
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| T |
39207483 |
ttctcctt |
39207490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 36 - 260
Target Start/End: Complemental strand, 39222936 - 39222712
Alignment:
| Q |
36 |
ttgacataggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagttcatc |
135 |
Q |
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|||||| |||||||||| ||||||||||| || ||||||||| ||| ||||||||||||||||| |||||||||| | ||||| ||||| |||| || |
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| T |
39222936 |
ttgacacaggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttatt |
39222837 |
T |
|
| Q |
136 |
ccatcgtccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgagttcttcctcctttaatttaatg |
235 |
Q |
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||||||| | | |||||| |||| ||||||||| || ||||| ||||| ||| |||||||||| ||||||||||||||| ||||||||| |||| ||| |
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| T |
39222836 |
ccatcgttcttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttcttttttgattcgagttcctcctcctttgattttatg |
39222737 |
T |
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| Q |
236 |
tccttcaattgttcttcgaattcct |
260 |
Q |
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||||||| ||||||||| ||||||| |
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| T |
39222736 |
tccttcacttgttcttcaaattcct |
39222712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 39192439 - 39192596
Alignment:
| Q |
43 |
aggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagttcatcccatcgt |
142 |
Q |
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|||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| ||||| |||||| ||||||| |
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| T |
39192439 |
aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt |
39192538 |
T |
|
| Q |
143 |
ccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttct |
200 |
Q |
| |
|
|| | ||||| |||| |||||||||||| ||||| ||||| ||| ||||||||||| |
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| T |
39192539 |
ccttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttct |
39192596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 200
Target Start/End: Original strand, 39198119 - 39198276
Alignment:
| Q |
43 |
aggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagttcatcccatcgt |
142 |
Q |
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|||||||||| || |||||||| ||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| ||||| |||||| ||||||| |
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| T |
39198119 |
aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt |
39198218 |
T |
|
| Q |
143 |
ccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttct |
200 |
Q |
| |
|
|| | ||||| |||| |||||||||||| ||||| ||||| ||| ||||||||||| |
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| T |
39198219 |
ccttctaattgcttctcttttgatttgaactcctccacttgacttttaaaatgcttct |
39198276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 205
Target Start/End: Complemental strand, 39215677 - 39215514
Alignment:
| Q |
42 |
taggatccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagttcatcccatcg |
141 |
Q |
| |
|
||||||||||| |||||||| || ||||||| |||||||| ||| |||||| |||| | |||||||||| | |||||| |||| ||||| | ||| || |
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| T |
39215677 |
taggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccg |
39215578 |
T |
|
| Q |
142 |
tccctgaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctctttt |
205 |
Q |
| |
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||| | |||||| |||| |||||||| ||| ||||||||||||| ||| ||||||| |||| |
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| T |
39215577 |
tccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttctttttt |
39215514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 213
Target Start/End: Complemental strand, 39468379 - 39468213
Alignment:
| Q |
47 |
tccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagttcatcccatcgtccct |
146 |
Q |
| |
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|||||| ||||||||||| |||||| |||||||| ||| ||||||||||||| |||||||| | |||||| |||| || ||| | || ||| | | |
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| T |
39468379 |
tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat |
39468280 |
T |
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| Q |
147 |
gaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcgag |
213 |
Q |
| |
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|||||| || | |||||||||||| ||||||||||| || ||||| |||| |||||||||||| |
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| T |
39468279 |
caaattgcttatcttttgatttgaaatcctcaacttgactgtcaaaatatttcttttttgattcgag |
39468213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 212
Target Start/End: Complemental strand, 16113339 - 16113174
Alignment:
| Q |
47 |
tccttgccttgtccttcacactgcttttcttttaagctgagctccttcaccttttctttgaacttgtactctttcgactccagttcatcccatcgtccct |
146 |
Q |
| |
|
|||||| ||||| ||||| |||||| |||||||| ||||||||||| ||||| ||||||||| | |||||| || || ||||| | ||| ||| | | |
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| T |
16113339 |
tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttctt |
16113240 |
T |
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| Q |
147 |
gaaattgtttctgttttgatttgaagtcctcaacttgtcttgaaaaatgcttctcttttgattcga |
212 |
Q |
| |
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|||||| || | ||||||||||| | ||||||||| ||| |||||||| | ||||||||||| |
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| T |
16113239 |
caaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttattttttgattcga |
16113174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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