View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_244 (Length: 267)
Name: NF7829A_low_244
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_244 |
 | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 95 - 261
Target Start/End: Original strand, 32650608 - 32650774
Alignment:
| Q |
95 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32650608 |
ggaatccaaaggaaaaagtaccagaacgtgaacaatcataatgattaactgaaatcatttcatgaggggtttgtttatatttgtgtaaatatcagaacaa |
32650707 |
T |
|
| Q |
195 |
ttctgatccatttacaacggcgataatgcaaattaatgaaaggaaagagtaaacgaattgagatgct |
261 |
Q |
| |
|
|||||||||||| | ||||| |||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32650708 |
ttctgatccattcatcacggccataatgaaaataaatgaaaggaaagagtaaacgaattgagatgct |
32650774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 12537306 - 12537407
Alignment:
| Q |
1 |
taccaaaaatcctgagttgacatcagcttttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggcgttagga |
97 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
12537306 |
taccaaaaaacctgagttgacatcagattttggcaactacttctcaaatgtgtggtaaaacttccttggaagaaagtaaacaacatcaggggcgttagga |
12537405 |
T |
|
| Q |
98 |
at |
99 |
Q |
| |
|
|| |
|
|
| T |
12537406 |
at |
12537407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 29276 - 29175
Alignment:
| Q |
1 |
taccaaaaatcctgagttgacatcagcttttggcaaggacttctcaaatgtgtggtaaaacttccttggaagaaagta---aacatcaggggcgttagga |
97 |
Q |
| |
|
||||||||| |||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
29276 |
taccaaaaaacctgagttgacatcagattttggcaacgacttctcaaatgagtggtaaaacttccttggaagaaagtaaacaacatcaagggcgttagga |
29177 |
T |
|
| Q |
98 |
at |
99 |
Q |
| |
|
|| |
|
|
| T |
29176 |
at |
29175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University