View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_248 (Length: 264)
Name: NF7829A_low_248
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_248 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 264
Target Start/End: Original strand, 18661850 - 18662094
Alignment:
| Q |
20 |
cagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaaca |
119 |
Q |
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| T |
18661850 |
cagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaaca |
18661949 |
T |
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| Q |
120 |
ttggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaattattgttgttgcaattgtaatgtaactatgtaa |
219 |
Q |
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| T |
18661950 |
ttggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaattattgttgttgcaattgcaatgtaactatgtaa |
18662049 |
T |
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| Q |
220 |
gtatatatagtgtgtatgagtgtatgctttatttgttgaaggtga |
264 |
Q |
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| T |
18662050 |
gtatatatagtgtgtatgagtgtatgctttatttgttgaaggtga |
18662094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 209
Target Start/End: Original strand, 21132741 - 21132930
Alignment:
| Q |
20 |
cagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaaca |
119 |
Q |
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| T |
21132741 |
cagcagagaaagttccctttgaagaaacaattacatcttctgcatgtttctctactgagagagaagagccttttttcaaagatgataaatgagatgaaca |
21132840 |
T |
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| Q |
120 |
ttggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaattattgttgttgcaattgtaatgt |
209 |
Q |
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| T |
21132841 |
ttggaagggaaatagaaagaagattaggaaaatatgtgaaattttgaaaaccatgttattagttaattattgttcttgcaattgcaatgt |
21132930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 21127416 - 21127607
Alignment:
| Q |
20 |
cagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaaca |
119 |
Q |
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| T |
21127416 |
cagcagagaaagttccctttgaagaaacagttacatcttctgcatgtttctctactgagagagaagagccctttttcaaagatgataaatgagatgaaca |
21127515 |
T |
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| Q |
120 |
ttggaagggaaatagcaacatgactaccaaaatatgtgaaattgtgtaagccattttattagttaattattgttgttgcaattgtaatgtaa |
211 |
Q |
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| T |
21127516 |
ttgaaagggaaatagaaagaagattaggaaaatatgtgaaattttgaaaaccatgttattagttaattattgttcttgcaattgcaatgtaa |
21127607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 21120032 - 21120180
Alignment:
| Q |
20 |
cagcagagaatgtaccctttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaac- |
118 |
Q |
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| T |
21120032 |
cagcagagaaagtgccatttgaagagacaattacatcttctgtatgtttctctacagagagagaagatcccttgttcaaagatgatacagaagatgaaca |
21120131 |
T |
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| Q |
119 |
--attggaagggaaatagcaacatgactaccaaaatatgtgaaattgtg |
165 |
Q |
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| T |
21120132 |
atattggaagggaaatagcaacaagactaaaaaaatatatgatattgtg |
21120180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 211
Target Start/End: Complemental strand, 39120221 - 39120049
Alignment:
| Q |
37 |
tttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagca |
136 |
Q |
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| T |
39120221 |
tttgaagaaacaattacatcttcagcatacttctctactgaaagagaggaccctttgttcaatgatgataatgaagatgaacattggaagggaaataaca |
39120122 |
T |
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| Q |
137 |
acatgactaccaaaatatgtgaaattgtgtaagccattttattagttaatt-attgttgttgcaattgtaatgtaa |
211 |
Q |
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| T |
39120121 |
agtaggctaggaaaaaatatgaaattgtgaaagcca---tgttagttaattgtttgttgttgcaattgcaatgtaa |
39120049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 211
Target Start/End: Complemental strand, 39129954 - 39129782
Alignment:
| Q |
37 |
tttgaagagacaattacatcttctgtatgtttctctactgagagagaggatccttttatcaaagatgatacagaggaggaacattggaagggaaatagca |
136 |
Q |
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| T |
39129954 |
tttgaagaaacaattacatcttcagcatacttctctactgaaagagaggaccctttgttcaatgatgataatgaagatgaacattggaagggaaataaca |
39129855 |
T |
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| Q |
137 |
acatgactaccaaaatatgtgaaattgtgtaagccattttattagttaatt-attgttgttgcaattgtaatgtaa |
211 |
Q |
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| T |
39129854 |
agtaggctaggaaaaaatatgaaattgtgaaagcca---tgttagttaattgtttgttgttgcaattgcaatgtaa |
39129782 |
T |
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