View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_252 (Length: 261)

Name: NF7829A_low_252
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_252
NF7829A_low_252
[»] chr7 (11 HSPs)
chr7 (1-244)||(35938762-35939005)
chr7 (1-204)||(35981485-35981688)
chr7 (1-204)||(36002897-36003100)
chr7 (2-207)||(36221996-36222201)
chr7 (5-207)||(32727039-32727241)
chr7 (2-213)||(36218005-36218216)
chr7 (5-207)||(35957461-35957663)
chr7 (5-207)||(35976916-35977118)
chr7 (5-207)||(35998328-35998530)
chr7 (5-202)||(35946258-35946455)
chr7 (5-162)||(35951937-35952094)
[»] chr1 (2 HSPs)
chr1 (17-183)||(18117552-18117718)
chr1 (5-205)||(18125183-18125383)
[»] chr2 (1 HSPs)
chr2 (17-207)||(26329053-26329243)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 35939005 - 35938762
Alignment:
Q  1 aggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35939005 aggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttgtaagagattctgagatatggaattta 35938906  T
Q  101 gaacagatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatccca 200  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  35938905 gaacagaagcaaaatgatattttacctgcactaaaattaagctatgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatatccca 35938806  T
Q  201 aagattacaccttccgcacttatagatgcagtattgctaaactt 244  Q
    |||||||||||||||||  |||||||||||||||||||||||||    
T  35938805 aagattacaccttccgcgattatagatgcagtattgctaaactt 35938762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 35981688 - 35981485
Alignment:
Q  1 aggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaattta 100  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||| |||| |||| ||||||||| |||||||| ||    
T  35981688 aggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaataagtgggtatttgtaagggattctgagttatggaatcta 35981589  T
Q  101 gaacagatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatccca 200  Q
    || |||| | || |||||||||||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||    
T  35981588 gagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatccca 35981489  T
Q  201 aaga 204  Q
    ||||    
T  35981488 aaga 35981485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 36003100 - 36002897
Alignment:
Q  1 aggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaattta 100  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||||||  |||||||||||||||||| |||| |||| ||||||||| |||||||| ||    
T  36003100 aggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgatttaaataagtgggtatttgtaagggattctgagttatggaatcta 36003001  T
Q  101 gaacagatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatccca 200  Q
    || |||| | || |||||||||||||||| || || ||||| ||||||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||    
T  36003000 gagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaaatgccatcctatttgaggcagtgttttgcttacttttccctctatccca 36002901  T
Q  201 aaga 204  Q
    ||||    
T  36002900 aaga 36002897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 36221996 - 36222201
Alignment:
Q  2 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttag 101  Q
    |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||  |||  |||||||   |||||| ||||| ||||    
T  36221996 ggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaaataagtggatattcgtaagagaccatgagatttggaacttag 36222095  T
Q  102 aacagatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaa 201  Q
    |||| | | ||  |||||||||||||||| ||||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||| | ||||||||    
T  36222096 aacaaaagaaaggtgatattttacctgcattaaaattaagctatgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaa 36222195  T
Q  202 agatta 207  Q
    ||||||    
T  36222196 agatta 36222201  T

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Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 32727241 - 32727039
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    ||||||||  |||||| ||||||| |||||||  | || ||||||| ||||||||||||||||  |||| | ||||||||||||||||||||||||||||    
T  32727241 gttccactttctgtgagaacattacgaagttccttattctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaac 32727142  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 204  Q
    ||| | || ||||||||||||||||| | || ||||||||||||||||| |||||||| |||||||| ||||||||||  |||||||| |||||||||||    
T  32727141 agaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaaga 32727042  T
Q  205 tta 207  Q
    |||    
T  32727041 tta 32727039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 2 - 213
Target Start/End: Original strand, 36218005 - 36218216
Alignment:
Q  2 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttag 101  Q
    |||||||| |||||||||| |||  |||||||||||||||| ||||||||||||||| ||||||||  |||| |||||||   |||||||||||||||||    
T  36218005 ggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagataagtggttatttgtaagagaccatgagatatggaatttag 36218104  T
Q  102 aacagatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaa 201  Q
    |||||| | || ||||||||||||||||  |||||||||||||||||||||| ||||| ||  |||| || |||||||||| ||||||| | ||||||||    
T  36218105 aacagaagaaagatgatattttacctgctttaaaattaagctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttccttgtatcccaa 36218204  T
Q  202 agattacacctt 213  Q
    ||| || |||||    
T  36218205 agactatacctt 36218216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 35957663 - 35957461
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    |||||||| || |||| ||| |||| ||||||||| || ||||| |||||| ||| ||||||||||||| | || || |||||||| |||||||||||||    
T  35957663 gttccactagccgtgagaactttagcaagttctctcttctcaaactttgatataagtaagtgggaatttgttagggactctgagatgtggaatttagaac 35957564  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 204  Q
    | | |   ||||||||||||||||| ||||||||||| ||||||||||| ||||| ||  |||| || |||||||||||||||||||| |||||||||||    
T  35957563 aaaagattaatgatattttacctgcgctaaaattaagttatgatcaaatgccatcatatctgagacaatgttttgcttatttttccctttatcccaaaga 35957464  T
Q  205 tta 207  Q
    |||    
T  35957463 tta 35957461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 35977118 - 35976916
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    ||||| || ||||||| |||||||||||||||||| || ||||| |||||| |||  |||||||||||  | || || |||||||| |||||||||||||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagcaagtgggaattcgttagggactctgagatgtggaatttagaac 35977019  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 204  Q
    | | | || ||| |||||||||||| ||||||||||||||||||||||| ||||| ||  |||| || ||||||| |||| ||||||| |||||||||||    
T  35977018 aaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaaga 35976919  T
Q  205 tta 207  Q
    |||    
T  35976918 tta 35976916  T

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Target: chr7; HSP #9
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 5 - 207
Target Start/End: Complemental strand, 35998530 - 35998328
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    ||||| || ||||||| |||||||||||||||||| || ||||| |||||| |||  |||||||||||  | || || |||||||| |||||||||||||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagcaagtgggaattcgttagggactctgagatgtggaatttagaac 35998431  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 204  Q
    | | | || ||| |||||||||||| ||||||||||||||||||||||| ||||| ||  |||| || ||||||| |||| ||||||| |||||||||||    
T  35998430 aaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgtttatatttccctttatcccaaaga 35998331  T
Q  205 tta 207  Q
    |||    
T  35998330 tta 35998328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 202
Target Start/End: Complemental strand, 35946455 - 35946258
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    |||||||| || |||| |||||||| ||||||||| || ||||| |||||| ||| ||||||||||||  | || || |||||||| |||||||||||||    
T  35946455 gttccactagccgtgagaacattagcaagttctctcttctcaaactttgatataagtaagtgggaattcgttagggactctgagatgtggaatttagaac 35946356  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaa 202  Q
    | | | || ||||||| |||||||| ||||||||||| ||||||||||| ||||| ||  | || || ||||||||||||||||| || | |||||||    
T  35946355 aaaagaaagatgatatcttacctgcgctaaaattaagttatgatcaaatgccatcatatctaagacaatgttttgcttatttttctctttttcccaaa 35946258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 35952094 - 35951937
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    |||||||||||||||||| |||| |||||||| || || ||||| || ||||||| ||||||||||||| | ||||| ||||  || |||||||||||||    
T  35952094 gttccactggctgtgaaatcattgggaagttccctcttctcaaacttcgatttaagtaagtgggaatttgtcagagactctgctatttggaatttagaac 35951995  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatccta 162  Q
    |   | || |||||||||||||||| || ||||||||||||||||||||  |||||||    
T  35951994 aacagaaagatgatattttacctgccctgaaattaagctatgatcaaatgtcatccta 35951937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 17 - 183
Target Start/End: Complemental strand, 18117718 - 18117552
Alignment:
Q  17 gtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatg 116  Q
    |||| |||||||||||| | ||||||||||||||||||||||||||| |||||| ||  |||||| |||||||| |||| ||||||||| | ||||||||    
T  18117718 gtgagaacattaggaagctgtctgttttcaaaatttgatttaaataaatgggaacttgcaagagactctgagatgtggactttagaacaaaagcaaaatg 18117619  T
Q  117 atattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgctta 183  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| || |||||||| ||||||||    
T  18117618 atattttacctgcactaaaattaagctatgataaaatgccatcctatttaaggcactgctttgctta 18117552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 205
Target Start/End: Complemental strand, 18125383 - 18125183
Alignment:
Q  5 gttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaac 104  Q
    |||||||| ||||| | ||||||||||||||| || || |||||||||||||||||||  |||  |||| |||||||||||||| | ||||||||| |||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgatttaaatacatggatatttgtaagagattctgagctgtggaatttaaaac 18125284  T
Q  105 agatgcaaaatgatattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaaga 204  Q
    ||    || ||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||||| || ||||||||||| ||||| ||||| |||||    
T  18125283 agcaaaaagatgatattttacctgcactaaaattgagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaaga 18125184  T
Q  205 t 205  Q
    |    
T  18125183 t 18125183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 26329053 - 26329243
Alignment:
Q  17 gtgaaaacattaggaagttctctgttttcaaaatttgatttaaataagtgggaatttataagagattctgagatatggaatttagaacagatgcaaaatg 116  Q
    |||||||| ||||||||||| || || ||||||||||||||| |||||||| | ||  | || || ||  | ||||||||||||   || |   || |||    
T  26329053 gtgaaaacgttaggaagttcactcttctcaaaatttgatttagataagtggaagttcgtcagggactcccaaatatggaatttaaggcaaaacaaagatg 26329152  T
Q  117 atattttacctgcactaaaattaagctatgatcaaataccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 207  Q
    ||||||||||||  || || ||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| | ||||||||||||    
T  26329153 atattttacctgtgcttaagttaagctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaagatta 26329243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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