View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7829A_low_254 (Length: 261)
Name: NF7829A_low_254
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_254 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37324564 - 37324824
Alignment:
| Q |
1 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37324564 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaagtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
37324663 |
T |
|
| Q |
101 |
cgggcccagccttcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttgg |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
37324664 |
cgggcccagccgtcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctataaataccatgcttgg |
37324763 |
T |
|
| Q |
201 |
ttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttga |
261 |
Q |
| |
|
||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37324764 |
ttttggtcccgacacaatgtcatgaaagtaaaagtgaaggtgagtgaatttctcttcttga |
37324824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37317004 - 37317264
Alignment:
| Q |
1 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37317004 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatattgaagtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
37317103 |
T |
|
| Q |
101 |
cgggcccagccttcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttgg |
200 |
Q |
| |
|
| || ||||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
37317104 |
caggaccagcagtcaatgggtcatccatggccacaacggtcccgaatggcaacgcattttttaccttgccattgggctcagctacaaataccatgctagg |
37317203 |
T |
|
| Q |
201 |
ttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttga |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37317204 |
ttttggtcctgacacgatgtcgtgaaagtaaaagtgaaggtgagtgaatttctcttcttga |
37317264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 37320583 - 37320843
Alignment:
| Q |
1 |
tcagtgaatgccatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgtt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
37320583 |
tcagtgaatgtcatggtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagttttgattcacgtt |
37320682 |
T |
|
| Q |
101 |
cgggcccagccttcaatggatcgtccatggccacaaccgtcccgaatggcaacgcattttttaccttgccattaggctcagctacaaataccatgcttgg |
200 |
Q |
| |
|
|||| |||||| |||| || || ||||| |||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
37320683 |
cgggtccagccgtcaaggggtcatccatcgccacaactgtcccgaatggcaaggcattttttaccttgccattgggctcagctacaaataccatgctagg |
37320782 |
T |
|
| Q |
201 |
ttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttga |
261 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37320783 |
ttttggtcctgacacgatgtcgtgaaagtaaaaatgaaggtgagtgaatttctcttcttga |
37320843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 149
Target Start/End: Original strand, 37306674 - 37306807
Alignment:
| Q |
16 |
gtcatcaccatcattagtcccatctcctcttgtgatatagaggtgtaaattccttgagccttacccacaagtttcgagtcacgttcgggcccagccttca |
115 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||| |||||| | ||| |
|
|
| T |
37306674 |
gtcataaccatcattagtcccatctcatcttgtgatattacagcgtaaattccttgagctttacccacgagtttcgagtcaagttcaggcccaatcgtca |
37306773 |
T |
|
| Q |
116 |
atggatcgtccatggccacaaccgtcccgaatgg |
149 |
Q |
| |
|
| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
37306774 |
acggatcatccatggccaccactgtcccgaatgg |
37306807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University