View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_255 (Length: 261)
Name: NF7829A_low_255
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_255 |
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| [»] scaffold0657 (1 HSPs) |
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Alignment Details
Target: scaffold0657 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0657
Description:
Target: scaffold0657; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 8183 - 7951
Alignment:
| Q |
3 |
agaagtcaactgtacataaatattt-agttatgtttaggatctctttgactaatttttatacatgaaattgtagaggtaggaaccattactggaattaaa |
101 |
Q |
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| T |
8183 |
agaagtcaactgtacataaatattttagttatgtttaggatctatttgactaatttttatacatgaaattgtagaggtaggaaccattactggaattaaa |
8084 |
T |
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| Q |
102 |
ttcgtggtatcttgcattgtggtgtgaatagttttgaggtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtcta |
201 |
Q |
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| T |
8083 |
tttgtggtatcttgcattgtggtgtgaatagttttgaggtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtcta |
7984 |
T |
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| Q |
202 |
tcccttttgtgattgcacattgtccttcatata |
234 |
Q |
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| T |
7983 |
tcccttttgtgattgcacattgtccttcatata |
7951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 19814348 - 19814116
Alignment:
| Q |
3 |
agaagtcaactgtacataaatattt-agttatgtttaggatctctttgactaatttttatacatgaaattgtagaggtaggaaccattactggaattaaa |
101 |
Q |
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| T |
19814348 |
agaagtcaactgtacataaatattttagttatgtttaggatctatttgactaatttttatacatgaaattgtagaggtaggaaccattactggaattaaa |
19814249 |
T |
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| Q |
102 |
ttcgtggtatcttgcattgtggtgtgaatagttttgaggtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtcta |
201 |
Q |
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| T |
19814248 |
tttgtggtatcttgcattgtggtgtgaatagttttgaggtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtcta |
19814149 |
T |
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| Q |
202 |
tcccttttgtgattgcacattgtccttcatata |
234 |
Q |
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| T |
19814148 |
tcccttttgtgattgcacattgtccttcatata |
19814116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 1203269 - 1203038
Alignment:
| Q |
3 |
agaagtcaactgtacataaatatttagttatgtttaggatctctttgactaatttttatacatgaaattgtagaggtaggaaccattactggaattaaat |
102 |
Q |
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| T |
1203269 |
agaagtcaactgtacataaatatttagttatgtttaggatctatttgactaatttttatacatgaaattgtagaggtaggaaccattactgaaattaaat |
1203170 |
T |
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| Q |
103 |
tcgtggtatcttgcattgtggtgtgaatagttttgaggtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtctat |
202 |
Q |
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| T |
1203169 |
ttgtggtatcttgcattgtggtgtgaatagttttgaagtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtctat |
1203070 |
T |
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| Q |
203 |
cccttttgtgattgcacattgtccttcatata |
234 |
Q |
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| T |
1203069 |
cccttttgtgattgcacattgtcctttatata |
1203038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 33 - 224
Target Start/End: Original strand, 42862898 - 42863089
Alignment:
| Q |
33 |
tgtttaggatctctttgactaatttttatacatgaaattgtagaggtaggaaccattactggaattaaattcgtggtatcttgcattgtggtgtgaatag |
132 |
Q |
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| T |
42862898 |
tgtttaggatctatttgattaatttttatacatgaaattgtagaggtaggaaccattactggagttaaatttgtggtatgttgcattgtggtgtgaatag |
42862997 |
T |
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| Q |
133 |
ttttgaggtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacatttgtctatcccttttgtgattgcacattgt |
224 |
Q |
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| T |
42862998 |
ttttgatgtgtggactgctttatattaagatataaagtcctatttatgtttgtttgatacattggtctatcccttttgtgattgcacattgt |
42863089 |
T |
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