View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_262 (Length: 259)

Name: NF7829A_low_262
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_262
NF7829A_low_262
[»] scaffold0049 (1 HSPs)
scaffold0049 (3-253)||(58137-58378)
[»] chr1 (20 HSPs)
chr1 (173-243)||(49557087-49557157)
chr1 (173-244)||(49517016-49517087)
chr1 (183-244)||(30371104-30371165)
chr1 (184-247)||(34179922-34179985)
chr1 (173-247)||(38578473-38578547)
chr1 (175-236)||(15360842-15360903)
chr1 (187-244)||(27738233-27738290)
chr1 (184-244)||(25479538-25479598)
chr1 (184-244)||(28467360-28467420)
chr1 (173-240)||(4200175-4200242)
chr1 (185-244)||(7218127-7218186)
chr1 (173-244)||(17269196-17269267)
chr1 (173-244)||(40304107-40304178)
chr1 (173-211)||(14737791-14737829)
chr1 (177-242)||(28938052-28938117)
chr1 (178-244)||(36070201-36070267)
chr1 (173-211)||(36641821-36641859)
chr1 (173-242)||(29007771-29007840)
chr1 (200-244)||(25006087-25006131)
chr1 (174-210)||(44936677-44936713)
[»] scaffold0024 (1 HSPs)
scaffold0024 (173-247)||(27522-27596)
[»] chr7 (10 HSPs)
chr7 (178-244)||(1417215-1417281)
chr7 (178-247)||(30456500-30456569)
chr7 (173-231)||(28165037-28165095)
chr7 (173-211)||(39591553-39591591)
chr7 (173-243)||(49060486-49060556)
chr7 (173-210)||(5276170-5276207)
chr7 (184-249)||(9527138-9527203)
chr7 (178-247)||(30496655-30496724)
chr7 (184-244)||(5006562-5006622)
chr7 (173-241)||(45813236-45813304)
[»] chr4 (15 HSPs)
chr4 (173-247)||(49219085-49219159)
chr4 (178-249)||(24929444-24929515)
chr4 (175-244)||(8130122-8130191)
chr4 (185-241)||(18630638-18630694)
chr4 (192-244)||(32920453-32920505)
chr4 (178-237)||(4071833-4071892)
chr4 (178-241)||(10192235-10192298)
chr4 (173-244)||(29373940-29374011)
chr4 (173-231)||(30024646-30024704)
chr4 (178-211)||(41701527-41701560)
chr4 (179-244)||(55870394-55870459)
chr4 (170-210)||(23815313-23815353)
chr4 (173-244)||(27623581-27623655)
chr4 (178-238)||(44638232-44638292)
chr4 (184-244)||(53626733-53626793)
[»] chr6 (14 HSPs)
chr6 (173-244)||(4006660-4006731)
chr6 (173-212)||(28531626-28531665)
chr6 (173-247)||(9668035-9668109)
chr6 (184-244)||(2727909-2727969)
chr6 (170-210)||(5328917-5328957)
chr6 (173-252)||(10452405-10452484)
chr6 (173-244)||(29274282-29274353)
chr6 (193-243)||(5550098-5550148)
chr6 (173-211)||(24836285-24836323)
chr6 (178-211)||(5551413-5551446)
chr6 (184-244)||(281901-281961)
chr6 (172-244)||(1402941-1403013)
chr6 (170-210)||(2027493-2027533)
chr6 (184-244)||(11340678-11340738)
[»] chr3 (15 HSPs)
chr3 (173-244)||(24235736-24235807)
chr3 (173-242)||(48364934-48365003)
chr3 (173-242)||(48397592-48397661)
chr3 (173-244)||(10101529-10101600)
chr3 (173-244)||(10212454-10212525)
chr3 (173-239)||(20192664-20192730)
chr3 (177-243)||(22214735-22214801)
chr3 (173-245)||(48323767-48323839)
chr3 (170-210)||(54775071-54775111)
chr3 (173-244)||(24887336-24887407)
chr3 (173-245)||(1395617-1395689)
chr3 (186-234)||(26599137-26599185)
chr3 (173-241)||(30956682-30956750)
chr3 (173-241)||(30972494-30972562)
chr3 (173-221)||(39971265-39971313)
[»] chr8 (9 HSPs)
chr8 (173-247)||(38561672-38561746)
chr8 (192-244)||(6509356-6509408)
chr8 (180-240)||(34551073-34551133)
chr8 (188-244)||(34770853-34770909)
chr8 (173-244)||(12361138-12361209)
chr8 (173-244)||(42597347-42597418)
chr8 (173-210)||(26820145-26820182)
chr8 (173-210)||(40728505-40728542)
chr8 (174-210)||(29699201-29699237)
[»] chr2 (10 HSPs)
chr2 (187-244)||(11513858-11513915)
chr2 (173-244)||(10143118-10143189)
chr2 (173-247)||(43199360-43199434)
chr2 (170-210)||(43199186-43199226)
chr2 (173-244)||(39567849-39567920)
chr2 (178-240)||(10285304-10285366)
chr2 (173-247)||(28803556-28803630)
chr2 (173-210)||(3458603-3458640)
chr2 (188-244)||(6993777-6993833)
chr2 (173-241)||(11344340-11344408)
[»] chr5 (9 HSPs)
chr5 (174-245)||(37690689-37690760)
chr5 (174-244)||(37526252-37526322)
chr5 (174-244)||(37588413-37588483)
chr5 (136-211)||(21782655-21782727)
chr5 (177-244)||(39823174-39823241)
chr5 (178-238)||(42181151-42181211)
chr5 (173-244)||(18704089-18704159)
chr5 (178-240)||(14295457-14295519)
chr5 (178-247)||(4855649-4855718)
[»] scaffold0508 (1 HSPs)
scaffold0508 (173-244)||(9828-9899)
[»] scaffold0053 (1 HSPs)
scaffold0053 (178-244)||(20130-20196)
[»] scaffold0549 (2 HSPs)
scaffold0549 (184-244)||(1777-1837)
scaffold0549 (184-244)||(3867-3927)


Alignment Details
Target: scaffold0049 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 3 - 253
Target Start/End: Complemental strand, 58378 - 58137
Alignment:
Q  3 gaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgtaaatc 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58378 gaaagccaaatcccagaattagtaagcagatgcagcttaggcttgaagcaaaagctaaggcagctttgtgactttttggtcgattagaggattgtaaatc 58279  T
Q  103 ttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacata 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||    
T  58278 ttgaaaagcatttgagaaaactgtgttaggctcgtttggaaatacaacttaattatgtg---------tttaagttatttatataacaaaagataacata 58188  T
Q  203 aagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  58187 aagtcaaatagtattaatatacgctataagttgttttcataaactctctcg 58137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 49557087 - 49557157
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 243  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||| || || |||||||||||||||||||    
T  49557087 taagttatttctataacaaaagataaaataaagttaaatagtattcatttaagctataagttgttttcata 49557157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 49517016 - 49517087
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| ||||||||||||||| |||||||||||| || || || || |||||||| |||||||||||    
T  49517016 taagttatttctataacaaaagataaaataaagtcaaattgttttcatttaagctataagctgttttcataa 49517087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 30371104 - 30371165
Alignment:
Q  183 atataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||||||||| ||||| |||||| || || ||||| ||||||||||||||||||||    
T  30371104 atataacaaaagataaaataaactcaaattgttttcatataagctataagttgttttcataa 30371165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 247
Target Start/End: Complemental strand, 34179985 - 34179922
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    ||||||||||||||| |||||||||||| || ||||| || |||||||  ||||||||||||||    
T  34179985 tataacaaaagataaaataaagtcaaattgttttaatctaagctataaactgttttcataaact 34179922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 38578473 - 38578547
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    |||| ||||| ||||||||||||||||||||||| ||||  | ||  |||| |||||||||||||| ||||||||    
T  38578473 taagctatttctataacaaaagataacataaagttaaattatttttgtataagctataagttgtttacataaact 38578547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 15360842 - 15360903
Alignment:
Q  175 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgt 236  Q
    |||||||| ||||||||||||||| |||||||||||  || || ||||| ||||||||||||    
T  15360842 agttatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagttgt 15360903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 244
Target Start/End: Complemental strand, 27738290 - 27738233
Alignment:
Q  187 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||||| |||||||||||| || || ||||| ||||||| ||||||||||||    
T  27738290 aacaaaagataaaataaagtcaaattgttttcatataagctataatttgttttcataa 27738233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 25479538 - 25479598
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||| |||||||| |||| ||||||| || || ||||| ||||||||||||||||||||    
T  25479538 tataaccaaagataaaataacgtcaaattgtcttcatataggctataagttgttttcataa 25479598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 28467420 - 28467360
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| ||||||||||||  | || ||||| |||| |||||||||||||||    
T  28467420 tataacaaaagataaaataaagtcaaattattttcatataagctacaagttgttttcataa 28467360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 4200175 - 4200242
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 240  Q
    |||||||||| ||||||||||||||| |||||||||| | || || ||||| ||||||  ||||||||    
T  4200175 taagttatttttataacaaaagataaaataaagtcaagttgttttcatataagctatatattgttttc 4200242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 244
Target Start/End: Complemental strand, 7218186 - 7218127
Alignment:
Q  185 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| ||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  7218186 ataataaaaggtaaaataaagtcaaattgttttcatataagctataagttgttttcataa 7218127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 17269196 - 17269267
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| || ||||||||  || |||||||||||| || || ||||| || |||||||||||||||||    
T  17269196 taagttatttctagaacaaaagtgaaaataaagtcaaattgttttcatataagcaataagttgttttcataa 17269267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 40304178 - 40304107
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||||||||||||||||||| ||||| ||| || || || ||||| | |||||| |||||||||||    
T  40304178 taagctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgttttcataa 40304107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 14737829 - 14737791
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaat 211  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  14737829 taagttatttctataacaaaagataaaataaagtcaaat 14737791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 28938052 - 28938117
Alignment:
Q  177 ttatttatataacaaaa-gataacataaagtcaaatagtattaatatacgctataagttgttttcat 242  Q
    |||||| |||||||||| |||||||||| |||||||  | || ||||||||||||||||||||||||    
T  28938052 ttatttttataacaaaaagataacataa-gtcaaatcattttcatatacgctataagttgttttcat 28938117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 36070201 - 36070267
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||| ||||||||||||||| ||||||| |||| || ||   ||| ||||||||||||||||||||    
T  36070201 tatttttataacaaaagataaaataaagttaaattgtcttcggataagctataagttgttttcataa 36070267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Original strand, 36641821 - 36641859
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaat 211  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  36641821 taagttatttctataacaaaagataaaataaagtcaaat 36641859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 29007840 - 29007771
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 242  Q
    |||||||||| |||||||||||| ||  ||||||||||   | || ||||| ||||||||||||||||||    
T  29007840 taagttatttctataacaaaagaaaaattaaagtcaaactattttcatataagctataagttgttttcat 29007771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 244
Target Start/End: Complemental strand, 25006131 - 25006087
Alignment:
Q  200 ataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||||| || || ||||| ||||||||||||||||||||    
T  25006131 ataaagtcaaattgttttcatataagctataagttgttttcataa 25006087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 44936713 - 44936677
Alignment:
Q  174 aagttatttatataacaaaagataacataaagtcaaa 210  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  44936713 aagttatttctataacaaaagataagataaagtcaaa 44936677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 27522 - 27596
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    |||||||||| ||||||| ||||||| |||||||||||| || || |||||  ||||||||||||||||||||||    
T  27522 taagttatttctataacagaagataaaataaagtcaaattgttttcatataaactataagttgttttcataaact 27596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 1417215 - 1417281
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||||||||| |||||||||||| || || ||||| || |||||||||||||||||    
T  1417215 tatttatataacaaaagataaaataaagtcaaattgttttcatataagcaataagttgttttcataa 1417281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 30456569 - 30456500
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    ||||| || |||||||||||| |||||||||||| || || ||||| | ||||||| |||||||||||||    
T  30456569 tatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataagtggttttcataaact 30456500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 28165037 - 28165095
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 231  Q
    |||||| ||| ||||||||||||||| || ||||||||| || |||||||| |||||||    
T  28165037 taagttctttctataacaaaagataaaatgaagtcaaattgttttaatataagctataa 28165095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 39591591 - 39591553
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaat 211  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  39591591 taagttatttctataacaaaagataaaataaagtcaaat 39591553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 49060486 - 49060556
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 243  Q
    |||| ||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||| ||||||||    
T  49060486 taagctatttctataacaaaaaataaaataaagtcaaattatttttatataagctataagttattttcata 49060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 5276170 - 5276207
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaa 210  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  5276170 taagctatttttataacaaaagataacataaagtcaaa 5276207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 249
Target Start/End: Complemental strand, 9527203 - 9527138
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 249  Q
    ||||||||||||||  |||||||||||  || || |||||  ||||||||||||||||||| ||||    
T  9527203 tataacaaaagatataataaagtcaaactgttttcatataaactataagttgttttcataagctct 9527138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 30496655 - 30496724
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    ||||| |||||||||| |||| |||||||||||| || ||  ||||  ||||| ||||||||||||||||    
T  30496655 tatttctataacaaaatataaaataaagtcaaattgttttcgtataacctataggttgttttcataaact 30496724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 5006622 - 5006562
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| |||||||||||  || || ||||| | ||||| ||||||||||||    
T  5006622 tataacaaaagataaaataaagtcaaactgttttcatataaggtataaattgttttcataa 5006562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 45813304 - 45813236
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 241  Q
    |||| ||||| |||| |||||||||| |||||||||| | || || |||||  ||||||||||||||||    
T  45813304 taagctatttctataccaaaagataaaataaagtcaacttgttttcatataatctataagttgttttca 45813236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 49219085 - 49219159
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    |||||||||| |||||||||| |||| ||||||||||||  | || ||||| |||||||||||||||||||||||    
T  49219085 taagttatttctataacaaaatataaaataaagtcaaattattttcatataagctataagttgttttcataaact 49219159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 24929444 - 24929515
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactct 249  Q
    ||||| ||||||||||||||| |||||||| ||  || || ||| | |||||||||||||||||||||||||    
T  24929444 tatttctataacaaaagataaaataaagtctaactgttttcataaaagctataagttgttttcataaactct 24929515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 8130122 - 8130191
Alignment:
Q  175 agttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||| ||||||||||||||||||||||||||||  | || ||||| |||||||  |||||||||||    
T  8130122 agttctttctataacaaaagataacataaagtcaaattattttcatataagctataaactgttttcataa 8130191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 241
Target Start/End: Original strand, 18630638 - 18630694
Alignment:
Q  185 ataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 241  Q
    |||||||||||||| |||||||||| | || || ||||| |||||||||||||||||    
T  18630638 ataacaaaagataaaataaagtcaattggttttcatataagctataagttgttttca 18630694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 32920505 - 32920453
Alignment:
Q  192 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||| |||||||||||| || |||||| | ||||||||||||||||||||    
T  32920505 aagataaaataaagtcaaatcgttttaatagaagctataagttgttttcataa 32920453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 4071833 - 4071892
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtt 237  Q
    ||||| ||||||||||||||| ||||||||||||  | || ||||| |||||||||||||    
T  4071833 tatttctataacaaaagataaaataaagtcaaattattttcatataagctataagttgtt 4071892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 178 - 241
Target Start/End: Original strand, 10192235 - 10192298
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 241  Q
    ||||| ||||||||||||||  |||||||||||| || || ||||| | |||||||||||||||    
T  10192235 tatttttataacaaaagatagaataaagtcaaattgttttcatataagttataagttgttttca 10192298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 29374011 - 29373940
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| ||||||| ||||||| |||| ||||||  ||||| ||||| ||||||| ||||||||||||    
T  29374011 taagctatttctataacagaagataaaataatgtcaaaatgtattcatataagctataatttgttttcataa 29373940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 30024646 - 30024704
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataa 231  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| |||||||    
T  30024646 taagttatttctataacaaaagataaaataaagtaaaattgttttcatataagctataa 30024704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 41701560 - 41701527
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaat 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  41701560 tatttatataacaaaagataaaataaagtcaaat 41701527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 55870459 - 55870394
Alignment:
Q  179 atttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||||||||||| | |||||||||||  || || | ||| ||||||||||||||||||||    
T  55870459 atttttataacaaaagatcaaataaagtcaaactgttttcacataagctataagttgttttcataa 55870394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 23815313 - 23815353
Alignment:
Q  170 gtttaagttatttatataacaaaagataacataaagtcaaa 210  Q
    ||||||||||||| ||||||||||||||| |||| ||||||    
T  23815313 gtttaagttatttctataacaaaagataaaataatgtcaaa 23815353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 27623581 - 27623655
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctat---aagttgttttcataa 244  Q
    |||| ||||| ||||||||||||||| |||||||||||   | |||||||| |||||   |||||||||||||||    
T  27623581 taagatatttgtataacaaaagataaaataaagtcaaactattttaatataagctataagaagttgttttcataa 27623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 44638292 - 44638232
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 238  Q
    ||||||||||||||||||| | ||||||| ||||   ||| ||||| ||||||||||||||    
T  44638292 tatttatataacaaaagattatataaagttaaattacattcatataagctataagttgttt 44638232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 53626733 - 53626793
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| ||||| |||||  || || ||||| |||||||| |||||||||||    
T  53626733 tataacaaaagataaaataaattcaaaatgttttcatataagctataagctgttttcataa 53626793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 4006660 - 4006731
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| ||||||||| ||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  4006660 taagatatttctataacaaatgataaaataaagtcaaattgtttttatataagctataagttgttttcataa 4006731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 28531665 - 28531626
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaata 212  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  28531665 taagttatttatataacaaaagataaaataaagtcaaata 28531626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 9668109 - 9668035
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    |||| ||||| ||||||||||||||||||| |||| ||| || || ||||| |||| || |||||||||||||||    
T  9668109 taagctatttgtataacaaaagataacatagagtcgaattgttttcatataagctacaatttgttttcataaact 9668035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 2727969 - 2727909
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||||||||   ||| |||||| ||||| ||||| ||||||||||||||||||||    
T  2727969 tataacaaaagataaacaaaaatcaaattgtattgatataagctataagttgttttcataa 2727909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5328917 - 5328957
Alignment:
Q  170 gtttaagttatttatataacaaaagataacataaagtcaaa 210  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  5328917 gtttaagttatttctataacaaaagataaaataaagtcaaa 5328957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 252
Target Start/End: Complemental strand, 10452484 - 10452405
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaactctctc 252  Q
    |||| ||||| |||||||||| |||| ||||| |||||   | || ||||| |||||||||||||| |||||||||||||    
T  10452484 taagctatttctataacaaaatataaaataaaatcaaactattttcatataagctataagttgtttccataaactctctc 10452405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 29274353 - 29274282
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| |||| |||||||||| |||||||||||| || || ||||| |||||||  |||||||||||    
T  29274353 taagctatttctatagcaaaagataaaataaagtcaaattgttttcatataagctataaactgttttcataa 29274282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 5550098 - 5550148
Alignment:
Q  193 agataacataaagtcaaatagtattaatatacgctataagttgttttcata 243  Q
    ||||||||||||||||||| || || ||||| |||||||| ||||||||||    
T  5550098 agataacataaagtcaaattgttttcatataagctataagctgttttcata 5550148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 24836323 - 24836285
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaat 211  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  24836323 taagttatttctataacaaaagataaaataaagtcaaat 24836285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 211
Target Start/End: Original strand, 5551413 - 5551446
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaat 211  Q
    ||||||||||||||||||||| ||||||||||||    
T  5551413 tatttatataacaaaagataaaataaagtcaaat 5551446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 281961 - 281901
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| |||||||||| | || || ||||| |||||||| ||| |||||||    
T  281961 tataacaaaagataaaataaagtcaacttgttttcatataagctataagctgtgttcataa 281901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 1402941 - 1403013
Alignment:
Q  172 ttaagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||| ||||| ||||||||||||||| ||||||| |||   | || ||||| ||||||| ||||||||||||    
T  1402941 ttaagctatttctataacaaaagataaaataaagttaaactattttcatataagctataaattgttttcataa 1403013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 2027533 - 2027493
Alignment:
Q  170 gtttaagttatttatataacaaaagataacataaagtcaaa 210  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  2027533 gtttaagctatttttataacaaaagataaaataaagtcaaa 2027493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 11340738 - 11340678
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  11340738 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 11340678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 24235807 - 24235736
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| ||||||||||||||| |||||||||||   | | |||||| ||||||||||||||||||||    
T  24235807 taagttatttctataacaaaagataatataaagtcaaactatttgaatataagctataagttgttttcataa 24235736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 48365003 - 48364934
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 242  Q
    ||||||||||  |||||||||||||| |||||||||||| || || || ||||| |||||||||||||||    
T  48365003 taagttatttcgataacaaaagataaaataaagtcaaattgttttcatttacgccataagttgttttcat 48364934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 48397592 - 48397661
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcat 242  Q
    |||||||||| ||||| ||||||||| |||||||||||| || || || || ||||||||||||||||||    
T  48397592 taagttatttttataataaaagataaaataaagtcaaattgtttttatttaagctataagttgttttcat 48397661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 10101600 - 10101529
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10101600 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10101529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 10212525 - 10212454
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| ||||||||||||||| ||||||| |||| || || ||||| | || |||||||||||||||    
T  10212525 taagttatttctataacaaaagataaaataaagttaaattgttttcatataagataaaagttgttttcataa 10212454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 239
Target Start/End: Complemental strand, 20192730 - 20192664
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgtttt 239  Q
    |||| ||||||||||||||||||||| ||||||||||| ||| || |||||  ||||||| ||||||    
T  20192730 taagctatttatataacaaaagataaaataaagtcaaacagttttcatataatctataagctgtttt 20192664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 177 - 243
Target Start/End: Complemental strand, 22214801 - 22214735
Alignment:
Q  177 ttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcata 243  Q
    |||||| ||||||||| ||||| ||||||| |||| ||||| |||||  ||||||||||||||||||    
T  22214801 ttatttctataacaaaggataaaataaagtgaaattgtattcatataacctataagttgttttcata 22214735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 48323767 - 48323839
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 245  Q
    |||||||||| ||||| ||||||||| |||||||||||| || ||  | || ||||||| |||||||||||||    
T  48323767 taagttatttctataataaaagataatataaagtcaaattgtttttctgtaagctataaattgttttcataaa 48323839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 54775071 - 54775111
Alignment:
Q  170 gtttaagttatttatataacaaaagataacataaagtcaaa 210  Q
    ||||||||||||| ||||||||||||||| |||||||||||    
T  54775071 gtttaagttatttctataacaaaagataaaataaagtcaaa 54775111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 24887407 - 24887336
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| |||||||| |||||| |||||||||||  ||||| ||||| |||| ||| |||||||||||    
T  24887407 taagctatttctataacaatagataaaataaagtcaaactgtattcatataagctaaaagctgttttcataa 24887336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 245
Target Start/End: Original strand, 1395617 - 1395689
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 245  Q
    |||| ||||| ||||||||||||||| ||||||||||||  | || ||||| ||||| |  ||||||||||||    
T  1395617 taagctatttctataacaaaagataaaataaagtcaaattattttcatataagctatgaactgttttcataaa 1395689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 26599137 - 26599185
Alignment:
Q  186 taacaaaagataacataaagtcaaatagtattaatatacgctataagtt 234  Q
    ||||||||||||| ||||||||||||||| || ||||| | ||||||||    
T  26599137 taacaaaagataaaataaagtcaaatagttttcatataaggtataagtt 26599185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 30956750 - 30956682
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 241  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30956750 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30956682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 30972562 - 30972494
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 241  Q
    |||| ||||| |||| |||||||||| ||||||| |||| || ||  |||| |||||||||||||||||    
T  30972562 taagctatttctatagcaaaagataaaataaagttaaattgtttttgtataggctataagttgttttca 30972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 39971265 - 39971313
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaata 221  Q
    ||||||| |||||||||||||||||| |||||| ||||| || ||||||    
T  39971265 taagttacttatataacaaaagataaaataaagccaaattgttttaata 39971313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 38561672 - 38561746
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    |||||||||||||||||||||||||| |||||||||||   | || || ||  ||||||||||||||||||||||    
T  38561672 taagttatttatataacaaaagataaaataaagtcaaactatttttatctatactataagttgttttcataaact 38561746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 244
Target Start/End: Complemental strand, 6509408 - 6509356
Alignment:
Q  192 aagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||| |||||||||||| ||||| ||||| |||||||| |||||||||||    
T  6509408 aagataaaataaagtcaaattgtatttatataagctataagctgttttcataa 6509356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 34551073 - 34551133
Alignment:
Q  180 tttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 240  Q
    |||||||||||||||||||||| ||||||||| || || || || | ||||||||||||||    
T  34551073 tttatataacaaaagataacatcaagtcaaattgttttcatttaagttataagttgttttc 34551133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 34770853 - 34770909
Alignment:
Q  188 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||| |||||||||||| || || || || ||||||||||||||||||||    
T  34770853 acaaaagataaaataaagtcaaattgttttcatttaagctataagttgttttcataa 34770909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 12361138 - 12361209
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| |||||  |||||||| || ||||||||| || || ||||| |||||||| |||||||||||    
T  12361138 taagttatttctataaataaagataaaatgaagtcaaattgttttcatataagctataagctgttttcataa 12361209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 42597347 - 42597418
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || || ||  | ||||||||||||||||||||    
T  42597347 taagctatttctataacaaaagataaaataaagtaaaattgttttcatgcaagctataagttgttttcataa 42597418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 26820145 - 26820182
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaa 210  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  26820145 taagttatttctataacaaaagataaaataaagtcaaa 26820182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 40728542 - 40728505
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaa 210  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40728542 taagttatttctataacaaaagataaaataaagtcaaa 40728505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 29699201 - 29699237
Alignment:
Q  174 aagttatttatataacaaaagataacataaagtcaaa 210  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  29699201 aagttatttctataacaaaagataaaataaagtcaaa 29699237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 11513858 - 11513915
Alignment:
Q  187 aacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||||| |||||||||||| || || ||||| ||||||||||||||||||||    
T  11513858 aacaaaagataaaataaagtcaaattgttttcatataagctataagttgttttcataa 11513915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 10143118 - 10143189
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| ||||||||||||||| || ||||||||  || || ||||| |||||||||| |||||||||    
T  10143118 taagttatttctataacaaaagataaaattaagtcaaactgtttttatataagctataagtttttttcataa 10143189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 43199360 - 43199434
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    |||||||||| || |||||||||||| ||||||| ||||  | ||  |||| |||||||||||||||||||||||    
T  43199360 taagttatttctacaacaaaagataaaataaagttaaattatcttcgtataagctataagttgttttcataaact 43199434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 43199186 - 43199226
Alignment:
Q  170 gtttaagttatttatataacaaaagataacataaagtcaaa 210  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  43199186 gtttaaattatttatataacaaaagataaaataaagtcaaa 43199226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 39567849 - 39567920
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||| ||||| ||||||||||||||| ||||||| |||| || | || ||| |||||||| |||||||||||    
T  39567849 taagatatttctataacaaaagataaaataaagttaaattgtttcaagataagctataagctgttttcataa 39567920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 10285304 - 10285366
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 240  Q
    ||||| ||||||||||| ||| |||| |||||||||  || ||||| ||||||||||||||||    
T  10285304 tatttctataacaaaagttaaaataatgtcaaataggttttatataagctataagttgttttc 10285366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 28803630 - 28803556
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    ||||||||||  |||||||||||||| |||||||||||  |  || ||||| |||| ||||||||||| ||||||    
T  28803630 taagttatttcgataacaaaagataaaataaagtcaaactgatttcatataagctacaagttgttttcttaaact 28803556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 3458603 - 3458640
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaa 210  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  3458603 taagttatttttataacaaaagataaaataaagtcaaa 3458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 6993833 - 6993777
Alignment:
Q  188 acaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||| |||| |||||||  |||| ||||| |||||| |||||||||||||    
T  6993833 acaaaagataaaataaggtcaaattatattcatataagctataggttgttttcataa 6993777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 241
Target Start/End: Complemental strand, 11344408 - 11344340
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttca 241  Q
    |||| ||||| ||||||||||||||| | |||||||||| || || ||| | ||||||| |||||||||    
T  11344408 taagatatttctataacaaaagataaaagaaagtcaaattgttttcatacaagctataaattgttttca 11344340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 37690760 - 37690689
Alignment:
Q  174 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaa 245  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| |||||||||||||||||||||    
T  37690760 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataaa 37690689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 37526322 - 37526252
Alignment:
Q  174 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37526322 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37526252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 37588483 - 37588413
Alignment:
Q  174 aagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||| ||||| ||||||||| || || ||||| ||| || ||||| ||||||||||||||||||||    
T  37588483 aagttatttctataataaaagataaaatcaaatcaaaaagttttcatataagctataagttgttttcataa 37588413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 211
Target Start/End: Complemental strand, 21782727 - 21782655
Alignment:
Q  136 gtttggaaatacaacttaattatgtgtttatagagtttaagttatttatataacaaaagataacataaagtcaaat 211  Q
    ||||||| | |||||||||||| ||||||||   ||||||| ||||| ||||||||||| ||| ||||||||||||    
T  21782727 gtttggataaacaacttaattaagtgtttat---gtttaagctatttctataacaaaagctaaaataaagtcaaat 21782655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 244
Target Start/End: Complemental strand, 39823241 - 39823174
Alignment:
Q  177 ttatttatataacaaaagataacataaagtcaaa-tagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||||||||||||||| ||||||||||| || | || ||||| |||| |||||||||||||||    
T  39823241 ttatttatataacaaaagataaaataaagtcaaactact-ttcatataagctacaagttgttttcataa 39823174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 42181211 - 42181151
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttt 238  Q
    ||||| ||||||||||||||| | |||||||||| || || ||||| ||||||||||||||    
T  42181211 tatttttataacaaaagataaaacaaagtcaaatggttttcatataagctataagttgttt 42181151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 18704159 - 18704089
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| ||||||||||||||| ||||||||||    | || ||||| ||||||||||||||||||||    
T  18704159 taagttatttctataacaaaagataa-ataaagtcaagctatttttatataagctataagttgttttcataa 18704089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 14295457 - 14295519
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttc 240  Q
    ||||| ||||||||||||||| |||||||||||  || || ||||| |||||||| |||||||    
T  14295457 tatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgttttc 14295519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 4855649 - 4855718
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataaact 247  Q
    ||||| |||||||||| |||| ||||||| |||| ||  | ||||| | |||||||||||||||||||||    
T  4855649 tatttttataacaaaaaataaaataaagttaaattgttatcatataagttataagttgttttcataaact 4855718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Complemental strand, 9899 - 9828
Alignment:
Q  173 taagttatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    |||||||||| |||||||||| |||| || |||||||| ||| || ||||| | |||| |||||||||||||    
T  9899 taagttatttctataacaaaaaataaaattaagtcaaaaagttttcatataagttataggttgttttcataa 9828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 244
Target Start/End: Original strand, 20130 - 20196
Alignment:
Q  178 tatttatataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||| |||||| |||||||| ||||||||||| |||  | ||||| ||||| ||||||||||||||    
T  20130 tatttctataaccaaagataaaataaagtcaaacagttatcatataagctattagttgttttcataa 20196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 1837 - 1777
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  1837 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 1777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 3927 - 3867
Alignment:
Q  184 tataacaaaagataacataaagtcaaatagtattaatatacgctataagttgttttcataa 244  Q
    ||||||||||||||| ||||||| || |  | || ||||||||||||||||| ||||||||    
T  3927 tataacaaaagataaaataaagttaatttattttcatatacgctataagttggtttcataa 3867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University