View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_266 (Length: 257)
Name: NF7829A_low_266
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_266 |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 27397345 - 27397098
Alignment:
| Q |
8 |
aaacagagaaaaataccaacagaaaaacagaaagcagggaatgcaagggacactagagtgcaagaaaccgcatgagaagctcaaagatcacgaaatcgaa |
107 |
Q |
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||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27397345 |
aaacagagaaaaataccaacagaaaaaca--aagtagggaatgcaagggacactagagtgcaagaaaccgcatgagaagctcaaagatcacgaaatcgaa |
27397248 |
T |
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| Q |
108 |
caaaatttatgttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttgtttttgttt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27397247 |
caaaatttatgttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttgtttttgttt |
27397148 |
T |
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| Q |
208 |
atctgacgaaatgcacgccacatgacaaacggctcccaacttaaaccaga |
257 |
Q |
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| T |
27397147 |
atctgacgaaatgcacgccacatgacaaacggctcccaacttaaaccaga |
27397098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 118 - 257
Target Start/End: Original strand, 20867976 - 20868115
Alignment:
| Q |
118 |
gttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttgtttttgtttatctgacgaa |
217 |
Q |
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| T |
20867976 |
gttcaggattaagaaatcgaacaaacctggcaccaatttaagcaatcaattgccttcacattcgaaagtgaattgtcattggtatcacttatctgatgaa |
20868075 |
T |
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| Q |
218 |
atgcacgccacatgacaaacggctcccaacttaaaccaga |
257 |
Q |
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| T |
20868076 |
atgcacgccacgcgagaatcggttcccagcttaaaccaga |
20868115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 99 - 257
Target Start/End: Complemental strand, 51498097 - 51497939
Alignment:
| Q |
99 |
gaaatcgaacaaaatttatgttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttg |
198 |
Q |
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|||||| ||| | ||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| |||| |||| |
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| T |
51498097 |
gaaatcaaactacattcatgctcaagattaagaaattgaacaaacctcacaccaatctaagcaatcaattgccttcacatccaaaagtgttttgtgcttg |
51497998 |
T |
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| Q |
199 |
tttttgtttatctgacgaaatgcacgccacatgacaaacggctcccaacttaaaccaga |
257 |
Q |
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| T |
51497997 |
gtattgcttatctgtcggaatgcacgccacatgacaagcggttcccagcttaaaccaga |
51497939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 256
Target Start/End: Complemental strand, 51481250 - 51481093
Alignment:
| Q |
99 |
gaaatcgaacaaaatttatgttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttg |
198 |
Q |
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|||||||||||||| | ||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| |||| || | |
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| T |
51481250 |
gaaatcgaacaaaagtcatgctcaaaattgagaaattgaacaaacctcacaccaatctaagcaatcaattgcctccacatccaaaagtgttttgtgctgg |
51481151 |
T |
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| Q |
199 |
tttttgtttatctgacgaaatgcacgccacatgacaaacggctcccaacttaaaccag |
256 |
Q |
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| T |
51481150 |
gtatttcttatctgacggaatgcacgccacatgacaagcggttcccagcttaaaccag |
51481093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 257
Target Start/End: Original strand, 30206093 - 30206251
Alignment:
| Q |
99 |
gaaatcgaacaaaatttatgttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttg |
198 |
Q |
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|||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||| |||||||||||| | || ||||||||||| | || | |||| |
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| T |
30206093 |
gaaatcaaacaaaattcatgctcaagattgagaaattgaacaaacctcacaccaacctaagcaatcaatagttttcacatccaaaagagttttttgcttg |
30206192 |
T |
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| Q |
199 |
tttttgtttatctgacgaaatgcacgccacatgacaaacggctcccaacttaaaccaga |
257 |
Q |
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| T |
30206193 |
gtattacttatctgacggaatgcacgccacatgacaaacggttcccagcttaaaccaga |
30206251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 124 - 257
Target Start/End: Complemental strand, 51456524 - 51456391
Alignment:
| Q |
124 |
gattgagaaattgaacaaacctcgcaccaatctaagcaatcaagtgccttaacatccaaaagtgacttgttcttgtttttgtttatctgacgaaatgcac |
223 |
Q |
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||||||||||| |||||||||| |||||||||||||||| || |||||| |||||||||| | | || ||| ||| |||| ||||| ||||||| |
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| T |
51456524 |
gattgagaaatcaaacaaacctcacaccaatctaagcaattaactgccttcacatccaaaactacatcgtatttggagttggttatttgacggaatgcac |
51456425 |
T |
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| Q |
224 |
gccacatgacaaacggctcccaacttaaaccaga |
257 |
Q |
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| T |
51456424 |
gccacatgactagtggttcccagcttaaaccaga |
51456391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 26357937 - 26357886
Alignment:
| Q |
116 |
atgttcaagattgagaaattgaacaaacctcgcaccaatctaagcaatcaag |
167 |
Q |
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| T |
26357937 |
atgttaaagattgagaaatcccacaaaccttgcaccaatctaagcaatcaag |
26357886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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