View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_276 (Length: 254)
Name: NF7829A_low_276
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_276 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 21764242 - 21764004
Alignment:
| Q |
1 |
tcagggggatgagggtgggctgaaagagtgtcgtccgaagatgctcctagtttggcaagaaaatctgcgcactggttaccttcccgtagcgtgtgatgca |
100 |
Q |
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| T |
21764242 |
tcagggggatgagggtgagctgaaagagtgtcgtccgaagaggctcctagtttggcaagaaaatctgcgcactggttaccttctcgtagcgtgtgatgca |
21764143 |
T |
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| Q |
101 |
acgaggcattagtatggaataacagcatcttgatctcgtgaataagcaccgcgtagacattgtattgcgacgaagcctccatggttgtgttaatagcaag |
200 |
Q |
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|||||||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| ||||| |||||||||||||||| |||||||||||||||| |
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| T |
21764142 |
acgaggcattagtatggaataacaacaccttgatctcatgaataagcaccgcgcagacatggtatttcgacgaagcctccatgattgtgttaatagcaag |
21764043 |
T |
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| Q |
201 |
gagagagtcggagtaactcttcagattagaaattcccat |
239 |
Q |
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||||||||||||||||| |||||||| |||||||||||| |
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| T |
21764042 |
gagagagtcggagtaacacttcagatcagaaattcccat |
21764004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 11159137 - 11159014
Alignment:
| Q |
1 |
tcagggggatgagggtgggctgaaagagtgtcgtccgaagatgctcctagtttggcaagaaaatctgcgcactggttaccttcccgtagcgtgtgatgca |
100 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11159137 |
tcagggggatgagggtgagctgaaagagtgacgtccgaagaggctcctaatttgacaagaaaatctgcgcactggttaccttcccgtagcgtgtgatgca |
11159038 |
T |
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| Q |
101 |
acgaggcattagtatggaataaca |
124 |
Q |
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|||||||||||||||||||||||| |
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| T |
11159037 |
acgaggcattagtatggaataaca |
11159014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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