View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_277 (Length: 252)
Name: NF7829A_low_277
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_277 |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 246
Target Start/End: Original strand, 7089788 - 7090017
Alignment:
| Q |
13 |
gacatcaaatcaaatacataaataaagtgaaaagnnnnnnnnnttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttca |
112 |
Q |
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| T |
7089788 |
gacatcaaatcaaatacataaataaagtgaaaa----aaaaaattacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttca |
7089883 |
T |
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| Q |
113 |
caacaccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7089884 |
caacaccctttgttatgtctctccataatctacaaactgaggcacaagctacaagtgcacggcgagatggccaagaggtttcactagcttccaccctttg |
7089983 |
T |
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| Q |
213 |
aattatgtctaatagtaactcgggaggtaaatta |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
7089984 |
aattatgtctaatagtaactcgggaggtaaatta |
7090017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 56 - 242
Target Start/End: Original strand, 7669653 - 7669839
Alignment:
| Q |
56 |
ttacctgcttcagtgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccataatctacaaactgaggc |
155 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7669653 |
ttacctgcttcaatgatatagggaaagtgatccaaccacactgttcaagtgtcttcacaacaccctttgttatgtctctccacaatctacaaactgaggc |
7669752 |
T |
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| Q |
156 |
acaagctacaagtgcgcggcgagatggccaagaggtttcactagcttccaccctttgaattatgtctaatagtaactcgggaggtaa |
242 |
Q |
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| T |
7669753 |
acaagctacaagtgcgcggagagatggccaagtggtttcactagcttccaccctttgaattatgtctaatagtaactcaggaggtaa |
7669839 |
T |
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