View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_282 (Length: 251)
Name: NF7829A_low_282
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_282 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 245
Target Start/End: Complemental strand, 30629724 - 30629493
Alignment:
| Q |
14 |
ttctcttccaactagattttcttcaaatacaagagtcacaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaagtctcaaac |
113 |
Q |
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| T |
30629724 |
ttctcttccaattagattttcttcaaatacaagagtcgtaaatcaaacttctgaccacttgtttaaagtactcgagttccttaccactcaaatctcaaac |
30629625 |
T |
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| Q |
114 |
caatcacaaattggtccctaatctacattataaccatagcataaaattataatgtttaatttacaacacaaaatcggaagaaagcataaactcataagca |
213 |
Q |
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| T |
30629624 |
caatcacaagttggtccctaatctacattataaccatatcataaaattaaaatgtttaatatacaacacaaaatcggaagaaagcataaactcataagca |
30629525 |
T |
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| Q |
214 |
ccttcaaactagaagttgaatacaaagataca |
245 |
Q |
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| T |
30629524 |
ccttcaaactagaagttgaatacaaagataca |
30629493 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 34329631 - 34329597
Alignment:
| Q |
48 |
gtcacaaatcaaacttctgaccacttgtttaaagt |
82 |
Q |
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| T |
34329631 |
gtcacaaatcaaacatctgaccacttgtttaaagt |
34329597 |
T |
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