View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_284 (Length: 251)

Name: NF7829A_low_284
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_284
NF7829A_low_284
[»] chr8 (9 HSPs)
chr8 (1-249)||(45495420-45495668)
chr8 (2-238)||(18236274-18236510)
chr8 (2-238)||(18245725-18245961)
chr8 (2-177)||(25047632-25047807)
chr8 (20-165)||(19754270-19754415)
chr8 (1-182)||(20747965-20748146)
chr8 (2-234)||(33598096-33598328)
chr8 (2-238)||(12919161-12919397)
chr8 (1-118)||(21209247-21209364)
[»] chr4 (7 HSPs)
chr4 (1-249)||(14935844-14936092)
chr4 (1-229)||(115694-115922)
chr4 (1-165)||(54696054-54696218)
chr4 (1-165)||(26815835-26815999)
chr4 (1-165)||(18127215-18127378)
chr4 (1-118)||(6696165-6696282)
chr4 (1-118)||(17155363-17155480)
[»] chr5 (12 HSPs)
chr5 (1-243)||(18711542-18711784)
chr5 (1-243)||(15326985-15327227)
chr5 (1-229)||(724710-724938)
chr5 (2-238)||(24296776-24297012)
chr5 (1-165)||(30450870-30451034)
chr5 (1-165)||(24416173-24416338)
chr5 (1-165)||(5604144-5604308)
chr5 (2-161)||(22454113-22454272)
chr5 (1-171)||(20951808-20951978)
chr5 (1-118)||(26198602-26198719)
chr5 (1-118)||(27416095-27416212)
chr5 (1-118)||(33943267-33943384)
[»] chr3 (10 HSPs)
chr3 (1-230)||(25507575-25507804)
chr3 (1-229)||(19688343-19688571)
chr3 (1-165)||(28360959-28361123)
chr3 (1-165)||(4363319-4363482)
chr3 (1-222)||(2158796-2159017)
chr3 (1-222)||(40089880-40090101)
chr3 (18-165)||(48982264-48982411)
chr3 (1-118)||(8976793-8976910)
chr3 (1-118)||(9541082-9541199)
chr3 (1-118)||(16405556-16405673)
[»] scaffold0021 (1 HSPs)
scaffold0021 (1-249)||(166823-167071)
[»] scaffold0049 (1 HSPs)
scaffold0049 (1-249)||(18534-18782)
[»] chr7 (12 HSPs)
chr7 (1-229)||(610278-610506)
chr7 (1-165)||(15179080-15179244)
chr7 (2-238)||(14640975-14641211)
chr7 (1-118)||(5388192-5388309)
chr7 (1-118)||(6538424-6538541)
chr7 (1-118)||(8504996-8505113)
chr7 (1-118)||(9541517-9541634)
chr7 (1-118)||(16138461-16138578)
chr7 (1-118)||(26354576-26354693)
chr7 (1-118)||(32102327-32102444)
chr7 (1-118)||(44901304-44901421)
chr7 (1-118)||(46501061-46501178)
[»] chr6 (10 HSPs)
chr6 (1-229)||(8998392-8998620)
chr6 (1-249)||(11377342-11377590)
chr6 (1-249)||(27747196-27747444)
chr6 (51-249)||(17946027-17946225)
chr6 (1-229)||(9007561-9007790)
chr6 (2-238)||(25898041-25898277)
chr6 (121-151)||(17945990-17946020)
chr6 (1-118)||(18164012-18164129)
chr6 (1-118)||(24928442-24928559)
chr6 (1-118)||(31360766-31360883)
[»] scaffold0096 (1 HSPs)
scaffold0096 (1-229)||(52561-52789)
[»] chr2 (8 HSPs)
chr2 (1-229)||(24992599-24992827)
chr2 (18-165)||(1794546-1794693)
chr2 (91-182)||(13945443-13945534)
chr2 (91-182)||(14086632-14086723)
chr2 (1-171)||(27166204-27166374)
chr2 (1-118)||(9510041-9510158)
chr2 (1-118)||(18655165-18655282)
chr2 (1-118)||(45018297-45018414)
[»] scaffold0500 (1 HSPs)
scaffold0500 (1-229)||(9489-9717)
[»] scaffold0010 (1 HSPs)
scaffold0010 (2-238)||(260416-260652)
[»] scaffold0028 (2 HSPs)
scaffold0028 (1-165)||(100568-100732)
scaffold0028 (100-229)||(85425-85554)
[»] chr1 (3 HSPs)
chr1 (2-238)||(14278253-14278489)
chr1 (1-225)||(20174891-20175115)
chr1 (1-118)||(16158830-16158947)
[»] scaffold0163 (1 HSPs)
scaffold0163 (1-171)||(19446-19616)
[»] scaffold0313 (1 HSPs)
scaffold0313 (1-171)||(13504-13674)
[»] scaffold0254 (1 HSPs)
scaffold0254 (1-118)||(14256-14373)


Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 45495668 - 45495420
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||||||  ||||||||||||| ||||||| |||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  45495668 aaatgaatcaaacgtagaaaaatatttttgggcagaagccataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaacc 45495569  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  45495568 ccgtatgaactctggaaaggaagaaaaccaaacatttcatattttcatatatttggctgttattgctacatcttaaacaataaagataccttggggaaat 45495469  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45495468 ttgactcaaagtcagacaaagcaatatttttgggatattcttctacatc 45495420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 18236274 - 18236510
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||||||| ||||||||||||  || |||| ||| |||||  ||||||||||| |||| |||| ||||||||||||| || | || |||||||    
T  18236274 aatgaatcaaacgttgaaaaatatttttaggctgaagccatcaacacatcttgctatatcataaatagagtttcaattagaaaaattctcaataaaaccc 18236373  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||||  ||| |||   ||| || |||||    
T  18236374 catatgaactctggaaaaacagaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatt 18236473  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| |||||||||| ||| || || ||||||    
T  18236474 tgattcaaaatcagacaaaggaattttcttaggatat 18236510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 18245725 - 18245961
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||||||| ||||||||||||  || |||| ||| |||||  ||||||||||| |||| |||| ||||||||||||| || | || |||||||    
T  18245725 aatgaatcaaacgttgaaaaatatttttaggctgaagccatcaacacatcttgctatatcataaatagagtttcaattagaaaaattctcaataaaaccc 18245824  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||||  ||| |||   ||| || |||||    
T  18245825 catatgaactctggaaaaacagaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatt 18245924  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| |||||||||| ||| || || ||||||    
T  18245925 tgattcaaaatcagacaaaggaattttcttaggatat 18245961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 2 - 177
Target Start/End: Complemental strand, 25047807 - 25047632
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||| ||| ||||||||||||| || |||| ||| |||||  ||||||||||| |||| ||||  |||||||||||| || | ||||||||||    
T  25047807 aatgaatcaaatgttgaaaaatatttttgggctgaagccatcaacacatcttgctatatcataaatagagtctcaattagaaaaattcttaacaaaaccc 25047708  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaa 177  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||||    
T  25047707 catatgaactctggaaaaacagaaaaccaaacatttcttattttcacatttttggctgtttttgctacattttaaa 25047632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 165
Target Start/End: Original strand, 19754270 - 19754415
Alignment:
Q  20 aaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccccgtatgaactctggaaag 119  Q
    |||||||| || || |||| |||||| ||  ||||||||||  |||| ||||  ||||| |||||||||||||||||||||||||||||||| || ||||    
T  19754270 aaatatttatgggcggaagccataaatacatcttgctatattttaaatagagtctcaataagaaaagttttaaacaaaaccccgtatgaactttgaaaag 19754369  T
Q  120 gaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
     ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  19754370 aaagaaagtcaaacatttcttattttcatatctttggatgttattg 19754415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 20747965 - 20748146
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| |  || | |||||| ||  ||||||||||| ||||||  | ||||||||||||| ||||||||||||||    
T  20747965 aaatgaatcaaatgtagaaaaatacttttgggttgatggcataaatacttcttgctatatcataaacatggtttcaattagaaaatttttaaacaaaacc 20748064  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaata 182  Q
    || |||||||||||||||   | ||| || ||||| |||||||||||||| |||||||||||||| || || ||||| ||||    
T  20748065 ccatatgaactctggaaaaatataaaacctaacatctcatattttcatatttttggatgttattgttatattttaaataata 20748146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 234
Target Start/End: Complemental strand, 33598328 - 33598096
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||| ||| ||||||||||||| || |||| ||| |||||  ||||||||||  |||| |||| |||||| |||||| || | ||||||||||    
T  33598328 aatgaatcaaatgttgaaaaatatttttgggctgaagccattaacacatcttgctatattttaaatagagtttcaatcagaaaaattctcaacaaaaccc 33598229  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | ||||| |||||||||   ||||| ||||||||||| || |||||||| ||||| |||| ||| ||||| |||||  ||| |||   | | || || ||    
T  33598228 cttatgagctctggaaaaatagaaaaccaaacatttcttactttcatatttttggttgtttttgttacattttaaatgataaagaaaacctaggaaagtt 33598129  T
Q  202 tgactcaaagtcagacaaagcaatatttttggg 234  Q
    ||||||||| |||||||||| ||| || |||||    
T  33598128 tgactcaaaatcagacaaaggaatcttcttggg 33598096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 12919161 - 12919397
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||| ||| ||||||||||||| || ||||  || |||||  ||||||||||  ||||  ||| ||||||||||||| || | ||||||||||    
T  12919161 aatgaatcaaatgttgaaaaatatttttgggctgaagctattaacacttcttgctatattataaatcgagtttcaattagaaaaattctcaacaaaaccc 12919260  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||| ||||||   ||||| ||| ||||||| |||||||| || ||||| |||| ||| || || |||||  ||| |||   | | || |||||    
T  12919261 cttatgaactttggaaaaacagaaaaccagacatttcttattttcacatttttggttgtttttgttatattttaaatgataaagaaaacctaggtaaatt 12919360  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| ||||| |||| ||| ||||| ||||||    
T  12919361 tgattcaaaatcagataaaggaatctttttaggatat 12919397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 21209364 - 21209247
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  21209364 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 21209265  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  21209264 ccatatgaactctggaaa 21209247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 14935844 - 14936092
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    ||||||||||||| |  ||||||||||||| ||||||| |||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||| ||||||    
T  14935844 aaatgaatcaaacatagaaaaatatttttgggcagaaggcataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaaaaaaacc 14935943  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  14935944 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggctgttattgctacatcttaaacaataaagataccttggggaaat 14936043  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14936044 ttgactcaaagtcagacaaagcaatatttttgggatattcttctacatc 14936092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 115694 - 115922
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  ||||||||| |||||| |||||||||||||||||||||    
T  115694 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaacc 115793  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| || || |||||||| | ||||  | | || ||||    
T  115794 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaat 115893  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||| ||||||||||| ||||||    
T  115894 ttgattcaaaatcagacaaagctatattt 115922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 54696218 - 54696054
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||  ||||||||||| ||||||| | ||||||||||||| ||||||||||||||    
T  54696218 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacttcttgctatatcataaacagggtttcaattagaaaaattttaaacaaaacc 54696119  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || || ||||||||||||   | ||| || ||||| |||||||||||||| ||||||||||||||    
T  54696118 ccatacgaactctggaaaaatataaaacctaacatctcatattttcatatttttggatgttattg 54696054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 26815835 - 26815999
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||  ||||||||||| ||||||  | ||||||||||||||||||||||||||||    
T  26815835 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacttcttgctatatcataaacatggtttcaattagaaaagttttaaacaaaacc 26815934  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || || ||||||||||||     ||| || ||||| |||||||||||| | ||||||||||||||    
T  26815935 ccatacgaactctggaaaaatgtaaaacctaacatctcatattttcatgtttttggatgttattg 26815999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 18127378 - 18127215
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||||||||  | |||||||||||| ||  ||||||||||| ||||  | | |||||||| ||||  || || |||||||    
T  18127378 aaatgaatcaaatgtagaaaaatatttttaggtagaagtcataaatacttcttgctatatcataaatcgtgattcaattaaaaaaaattgaa-caaaacc 18127280  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
     | |||||||||||||||   ||||| || ||||||||||||||||| || ||||| ||||||||    
T  18127279 tcatatgaactctggaaaaatagaaaacctaacatttcatattttcacatttttggttgttattg 18127215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6696165 - 6696282
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  6696165 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 6696264  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  6696265 ccatatgaactctggaaa 6696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 17155363 - 17155480
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| || | || ||||| ||||||| ||| |||||  |||| || ||  | || |||| |||||| ||||| ||| | |||||||||    
T  17155363 aaatgaatcaaatgttgaagattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttcaataagaaaggttcttaacaaaacc 17155462  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  17155463 ccatatgaactctggaaa 17155480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 18711542 - 18711784
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||||||  ||||||||||||| ||||||| |||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  18711542 aaatgaatcaaacgtagaaaaatatttttgggcagaagccataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaacc 18711641  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||| ||||||||||||    
T  18711642 ccgtatgaactttggaaaggaagaaagccaaacatttcatattttcatatatttggctgttattgctacatcctaaacaataaagataccttggggaaat 18711741  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  18711742 ttgactcaaagtcagacaaagcaatatttttgggatattcttc 18711784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 15327227 - 15326985
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||||||  ||||||||||||| ||||||| |||||| ||| ||||||||||| | ||||||| ||||||||||||||||||||||||||||    
T  15327227 aaatgaatcaaacgtagaaaaatatttttgggcagaagccataaatacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaacc 15327128  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||| |||| | ||||||||||    
T  15327127 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatttttggctgttattgctacatcctaaacaataaagatactttggggaaat 15327028  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  15327027 ttgactcaaagtcagacaaagcaatatttttgggatattcttc 15326985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 724938 - 724710
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  ||||||||| |||||| |||||||||||||||||||||    
T  724938 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaacc 724839  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| || || |||||||| | ||||  | | || ||||    
T  724838 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaat 724739  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||| ||||||||||| ||||||    
T  724738 ttgattcaaaatcagacaaagctatattt 724710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 24297012 - 24296776
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||||||| ||||||||||||  || |||| ||| |||||  ||||||||||| |||| |||| ||||||||||||| || | || |||||||    
T  24297012 aatgaatcaaacgttgaaaaatatttttaggctgaagccatcaacacatcttgctatatcataaatagagtttcaattagaaaaattctcaataaaaccc 24296913  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||||  ||| |||   ||| || |||||    
T  24296912 catatgaactctggaaaaacagaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatt 24296813  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| |||||||||| ||| || || ||||||    
T  24296812 tgattcaaaatcagacaaaggaattttcttaggatat 24296776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 30451034 - 30450870
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||  |||| |||||| ||||||| | ||||||||||||||||||||||||||||    
T  30451034 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacttcttgttatatcataaacagggtttcaattagaaaagttttaaacaaaacc 30450935  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || || ||||||||||||   | ||| || ||||| |||||||||||||| ||||||||||||||    
T  30450934 ccatacgaactctggaaaaatataaaacctaacatctcatattttcatatttttggatgttattg 30450870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 24416173 - 24416338
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||  ||||||||||| ||||||| | |||||||||||||||||||||||||||     
T  24416173 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacttcttgctatatcataaacagggtttcaattagaaaagttttaaacaaaact 24416272  T
Q  101 ccgtatgaactct-ggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || || ||||||| |||||   | ||| || ||||| |||||||||||||| ||||||||||||||    
T  24416273 ccatacgaactctaggaaaaatataaaacctaacatctcatattttcatatttttggatgttattg 24416338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 5604144 - 5604308
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||| ||||||||||  ||||  | |  || ||||||||| ||||||||||||||    
T  5604144 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacctcttgctatattataaatcgtgtctctattagaaaaattttaaacaaaacc 5604243  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || |||||||||||||||   | ||| |||||||| || |||||||| || ||||| ||||||||    
T  5604244 ccatatgaactctggaaaaataaaaaaccaaacatctcttattttcacatttttggttgttattg 5604308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 22454272 - 22454113
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||| ||  ||||||||||||  || |||| ||| |||||  ||||||||||  ||||  ||| |||||| |||||| || | ||||||||||    
T  22454272 aatgaatcaaatgtggaaaaatattttttggctgaagccattaacacatcttgctatattttaaatcgagtttcaatcagaaaaattctcaacaaaaccc 22454173  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgtt 161  Q
    | ||||| |||||||||   ||||| ||||||||||| ||||||||||| ||||| ||||    
T  22454172 cttatgagctctggaaaaatagaaaaccaaacatttcttattttcatatttttggttgtt 22454113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 20951808 - 20951978
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| || | |||||||| ||||||| ||| |||||  ||||||| ||  | || |||| |||||| ||||| ||| | || ||||||    
T  20951808 aaatgaatcaaatgttgaagattatttttgggcagaagccattaacacatcttgctacattttgaatagagtttcaataagaaaggttctcaataaaacc 20951907  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacat 171  Q
    || |||||||||||||||   |  || || | ||| || |||||||| |||||||| || |||||||||||    
T  20951908 ccatatgaactctggaaaaatatcaaacctagcatatcttattttcacatatttggttgctattgctacat 20951978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 26198719 - 26198602
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  26198719 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 26198620  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  26198619 ccatatgaactctggaaa 26198602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 27416095 - 27416212
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  27416095 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 27416194  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  27416195 ccatatgaactctggaaa 27416212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33943267 - 33943384
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  33943267 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 33943366  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  33943367 ccatatgaactctggaaa 33943384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 25507804 - 25507575
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| ||||||||||||| |||||||  ||||| ||| ||||||||||| | ||||||| |||||| |||||||||||||||||||||    
T  25507804 aaatgaatcaaatgttgaaaaatatttttgggcagaagaaataaatacctcttgctatatcttgaacagagtttcaataagaaaagttttaaacaaaacc 25507705  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||||| |||| ||||||||| ||||| || ||||||| | ||   ||||| || |    
T  25507704 ccgtatgaactctggaaaggaagaaagctaaacatttcatactttcatatctttgaatgttattgttacattttgaacaataaaaatgtgttgggaaagt 25507605  T
Q  201 ttgactcaaagtcagacaaagcaatatttt 230  Q
    |||||||||| |||||||| ||||| ||||    
T  25507604 ttgactcaaaatcagacaaggcaatgtttt 25507575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 19688343 - 19688571
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | |||||||| || |||||||||||||| ||  ||||||| ||  ||||||||| |||||| |||||||||||||||||||||    
T  19688343 aaatgaatcaaatgttgagaaatatttgtgggcagaagtcataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaacc 19688442  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| || || |||||||| | | ||  | | || ||||    
T  19688443 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaatataacctaggaaaat 19688542  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||||||||||||||| ||||||    
T  19688543 ttgattcaaagtcagacaaagctatattt 19688571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 28361123 - 28360959
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||  ||||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  28361123 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacttcttgctatatcataaacagggtttcaattagaaaagttttaaacaaaacc 28361024  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || || ||||||||||||     ||| || ||||| |||||||||||| | ||||||||||||||    
T  28361023 ccatacgaactctggaaaaatgtaaaacctaacatctcatattttcatgtttttggatgttattg 28360959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 4363482 - 4363319
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||||||||  | |||||||||||| ||  ||||||||||| ||||  | | |||||||| ||||  || || |||||||    
T  4363482 aaatgaatcaaatgtagaaaaatatttttaggtagaagtcataaatacttcttgctatatcataaatcgtgattcaattaaaaaaaattgaa-caaaacc 4363384  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
     | |||||||||||||||   ||||| || ||||||||||||||||| || ||||| ||||||||    
T  4363383 tcatatgaactctggaaaaatagaaaacctaacatttcatattttcacatttttggttgttattg 4363319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2158796 - 2159017
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| ||||||||||||| || ||||  ||||||||  ||||||||||  | ||  | | | | || |||||  || |||||||||||    
T  2158796 aaatgaatcaaatgttgaaaaatatttttgggctgaagcaataaacacatcttgctatattctgaatcgtgttactatcagaaattttctaaacaaaacc 2158895  T
Q  101 ccgtatgaactctggaaagg-aagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaa 199  Q
    || |||||||||||||||   |||||| || | |||| |||| |||||||| |||||||||||||| ||||| || ||||| | ||||   ||| | ||     
T  2158896 ccatatgaactctggaaaaataagaaa-cctaccattgcatactttcatatctttggatgttattgttacattttgaacaacaaagataatttgagtaag 2158994  T
Q  200 tttgactcaaagtcagacaaagc 222  Q
    |||||||| ||||||||||||||    
T  2158995 tttgactctaagtcagacaaagc 2159017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40090101 - 40089880
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| ||||||||||||| || ||||  ||||||||  ||||||||||| | ||  | | | | || |||||  || |||||||||||    
T  40090101 aaatgaatcaaatgttgaaaaatatttttgggctgaagcaataaacacatcttgctatatcctgaatcgtgttactatcagaaattttctaaacaaaacc 40090002  T
Q  101 ccgtatgaactctggaaagg-aagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaa 199  Q
    || |||||||||||||||   |||||| || | |||| |||| |||||||| |||||||||||||| ||||| || ||||| | ||||    || | ||     
T  40090001 ccatatgaactctggaaaaataagaaa-cctaccattgcatactttcatatctttggatgttattgttacattttgaacaacaaagataatctgagtaag 40089903  T
Q  200 tttgactcaaagtcagacaaagc 222  Q
    |||||||| ||||||||||||||    
T  40089902 tttgactctaagtcagacaaagc 40089880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 48982264 - 48982411
Alignment:
Q  18 aaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccccgtatgaactctggaa 117  Q
    ||||||| ||||| || |||| |||||| ||| ||||||||||  ||||  | |  || ||||||||| |||||||||||||||| ||||||||||||||    
T  48982264 aaaaatacttttgggctgaagccataaatacctcttgctatattataaatcgtgtctctattagaaaaattttaaacaaaaccccatatgaactctggaa 48982363  T
Q  118 aggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    |   | ||| |||||||| || |||||||| || ||||| ||| ||||    
T  48982364 aaataaaaaaccaaacatctcttattttcacatttttggttgtcattg 48982411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8976793 - 8976910
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  8976793 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 8976892  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  8976893 ccatatgaactctggaaa 8976910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 9541082 - 9541199
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  9541082 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 9541181  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  9541182 ccatatgaactctggaaa 9541199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 16405556 - 16405673
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  16405556 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 16405655  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  16405656 ccatatgaactctggaaa 16405673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 166823 - 167071
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| |||||||| ||||||  |||||| ||  ||||||||||| ||||||||| |||||| |||||||||||||||||||||    
T  166823 aaatgaatcaaatgttgaaaagtatttttgggcagaaaccataaatacttcttgctatatcttaaacagagtttcaataagaaaagttttaaacaaaacc 166922  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    || ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||  ||||||| | ||||    || | || |    
T  166923 ccatatgaactctggaaagggagaaagccaaacatttcatattttcacatctttggatgttattgctatattctaaacaacaaagatagtctgagaaagt 167022  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
    ||||| |||| ||||| |||| ||||||||||||||||||||| |||||    
T  167023 ttgacccaaaatcagataaaggaatatttttgggatattcttccacatc 167071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 18534 - 18782
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||| ||||| ||| ||||||||||||| ||||||| | |||| ||  ||||  ||||| |||||| || |||||| ||||   |||| || ||||||    
T  18534 aaatgagtcaaatgttgaaaaatatttttgggcagaagccgtaaatacttcttgtcatatcttaaacatagtttcaataagaattttttttaataaaacc 18633  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||  ||||||| ||||||   ||||| || |    
T  18634 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcacatctttggatgctattgctatattctaaacaacagagatagtttgggaaagt 18733  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
    |||||||||| |||||||||| ||||||||||||||||||||| |||||    
T  18734 ttgactcaaaatcagacaaaggaatatttttgggatattcttccacatc 18782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 6e-55; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 610278 - 610506
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  ||||||||| |||||| |||||||||||||||||||||    
T  610278 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaacc 610377  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| || || |||||||| | ||||  | | || ||||    
T  610378 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaat 610477  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||| ||||||||||| ||||||    
T  610478 ttgattcaaaatcagacaaagctatattt 610506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 15179080 - 15179244
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  | ||||| ||||| ||  ||| |||||| ||  ||||||||||| ||||||| | ||||||||||||| ||||||||||||||    
T  15179080 aaatgaatcaaatgtagagaaatacttttgggctaaagccataaatacttcttgctatatcataaacagggtttcaattagaaaaattttaaacaaaacc 15179179  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || ||   ||||||||||   | ||| || ||||| |||||||||||||| ||||| ||||||||    
T  15179180 ccatacttactctggaaaaatataaaacctaacatctcatattttcatatttttggttgttattg 15179244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 14641211 - 14640975
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||| ||| ||||||||||||| || ||||  || |||||  ||||||||||  ||||  ||| ||| ||||||||| || | |||||||| |    
T  14641211 aatgaatcaaatgttgaaaaatatttttgggctgaagctattaacacttcttgctatattataaatcgagtttctattagaaaaattctcaacaaaactc 14641112  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   | ||| ||| ||||||| |||||||| || ||||| |||| ||| || || |||||  ||| |||   | | || |||||    
T  14641111 cttatgaactctggaaaaacaaaaaaccagacatttcttattttcacatttttggttgtttttgttatattttaaatgataaagaaaacctaggaaaatt 14641012  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| ||||| |||| ||| ||||| ||||||    
T  14641011 tgattcaaaatcagataaaggaatctttttaggatat 14640975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 5388309 - 5388192
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  5388309 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 5388210  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  5388209 ccatatgaactctggaaa 5388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 6538424 - 6538541
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  6538424 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 6538523  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  6538524 ccatatgaactctggaaa 6538541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 8504996 - 8505113
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  8504996 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 8505095  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  8505096 ccatatgaactctggaaa 8505113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 9541634 - 9541517
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  9541634 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaatgttcttaacaaaacc 9541535  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  9541534 ccatatgaactctggaaa 9541517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 16138578 - 16138461
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  16138578 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacttcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 16138479  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  16138478 ccatatgaactctggaaa 16138461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 26354693 - 26354576
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  26354693 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 26354594  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  26354593 ccatatgaactctggaaa 26354576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 32102327 - 32102444
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  32102327 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 32102426  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  32102427 ccatatgaactctggaaa 32102444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44901304 - 44901421
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  44901304 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 44901403  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  44901404 ccatatgaactctggaaa 44901421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 46501061 - 46501178
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  46501061 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 46501160  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  46501161 ccatatgaactctggaaa 46501178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 6e-55; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 8998392 - 8998620
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  ||||||||| |||||| |||||||||||||||||||||    
T  8998392 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaacc 8998491  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||||||||| || || |||||||| | ||||  | | || ||||    
T  8998492 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaat 8998591  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||| ||||||||||| ||||||    
T  8998592 ttgattcaaaatcagacaaagctatattt 8998620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 11377342 - 11377590
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| |||||||| |||||||| ||||||  |||| | ||  ||||||||||| |||||| || |||||| ||||   ||||||||||||||    
T  11377342 aaatgaatcaaatgttaaaaagtatttttgggcagaatccatatatacttcttgctatatcttaaacaaagtttcaataagaatttttttaaacaaaacc 11377441  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||  ||||||| | ||||    |||| |  |    
T  11377442 ccgtatgaactctgtaaaggaagaaagccaaacatttcatattttcacatctttggatgttattgctacattctaaacaacaaagatagtctgggaatgt 11377541  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
    ||||| |||| ||||| |||  ||||||||||||||||||||| |||||    
T  11377542 ttgacccaaaatcagataaaagaatatttttgggatattcttccacatc 11377590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 27747444 - 27747196
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||| ||||| ||| ||||||||||||| ||||||| |||||| ||  ||||  ||||| ||||||||| ||| || |||||||||||  | ||||||    
T  27747444 aaatgagtcaaatgttgaaaaatatttttgggcagaagccataaatacttcttgtcatatcttaaacagagtttctataagaaaagtttttgataaaacc 27747345  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||| ||  ||||||| | ||||    | || || |    
T  27747344 ccgtatgaactctgaaaaggaagaaagccaaacatttcatattttcacatctttggatgttattgctatattctaaacaacaaagataatctaggaaagt 27747245  T
Q  201 ttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
    |||| ||||| |||||||||| ||||||||||||||||||||| |||||    
T  27747244 ttgattcaaaatcagacaaaggaatatttttgggatattcttccacatc 27747196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 249
Target Start/End: Original strand, 17946027 - 17946225
Alignment:
Q  51 cttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatat 150  Q
    |||| |||||| ||||||||| |||||| |||||||||||||||||||| | ||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  17946027 cttgatatatcttaaacagagtttcaataagaaaagttttaaacaaaactctgtatgaactctagaaaggaagaaaggcaaacatttcatattttcatat 17946126  T
Q  151 atttggatgttattgctacatcttaaacaatagagattccttggggaaatttgactcaaagtcagacaaagcaatatttttgggatattcttcgacatc 249  Q
     ||||||||||||   |||||||| ||||| | |||   |||||| || ||||||||||| |||||||||||| |||||||||||||||| || |||||    
T  17946127 ttttggatgttatctttacatcttgaacaacaaagacatcttgggaaagtttgactcaaaatcagacaaagcattatttttgggatattcatctacatc 17946225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9007561 - 9007790
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  |||| |||| |||||| |||||||||||||||||||||    
T  9007561 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaatagagtttcaataagaaaagttttaaacaaaacc 9007660  T
Q  101 ccgtatgaactct-ggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaa 199  Q
    ||||||||||||| | |||| |||||||||| ||||||| ||||||||||| |||||||||||||| || || |||||||| | ||||  | | || |||    
T  9007661 ccgtatgaactctagaaaagaaagaaagccagacatttcttattttcatatttttggatgttattgttatattttaaacaacaaagataacctaggaaaa 9007760  T
Q  200 tttgactcaaagtcagacaaagcaatattt 229  Q
    ||||| ||||||||||||||||| ||||||    
T  9007761 tttgattcaaagtcagacaaagctatattt 9007790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 25898041 - 25898277
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||||||| ||||||||||||| || |||| ||| |||||  ||||||||||| |||| |||| ||||||||||||| || | || |||||||    
T  25898041 aatgaatcaaacgttgaaaaatatttttgggctgaagccatcaacacatcttgctatatcataaatagagtttcaattagaaaatttctcaataaaaccc 25898140  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||||  ||| |||   ||| || |||||    
T  25898141 catatgaactctggaaaaacagaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatt 25898240  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| |||||||||| ||| || || ||||||    
T  25898241 tgattcaaaatcagacaaaggaattttcttaggatat 25898277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 151
Target Start/End: Original strand, 17945990 - 17946020
Alignment:
Q  121 aagaaagccaaacatttcatattttcatata 151  Q
    |||||||||||||||||||||||||||||||    
T  17945990 aagaaagccaaacatttcatattttcatata 17946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18164012 - 18164129
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  18164012 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 18164111  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  18164112 ccatatgaactctggaaa 18164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 24928559 - 24928442
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  24928559 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 24928460  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  24928459 ccatatgaactctggaaa 24928442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31360766 - 31360883
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  31360766 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 31360865  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  31360866 ccatatgaactctggaaa 31360883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 52561 - 52789
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  ||||||||| |||||| |||||||||||||||||||||    
T  52561 aaatgaatcaaatgttgagaaatatttttgggcagaagacataaatacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaacc 52660  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||| ||||| || || |||||||| | ||||  | | || ||||    
T  52661 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgatattgttatattttaaacaacaaagataacctaggaaaat 52760  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||| ||||||||||| ||||||    
T  52761 ttgattcaaaatcagacaaagctatattt 52789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 24992599 - 24992827
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||  ||||||||| |||||| |||||| ||||||||||||||    
T  24992599 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacattttaaacagagtttcaataagaaaatttttaaacaaaacc 24992698  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    ||||||||||||||||||| |||||||||| ||||||| ||||||||||| |||||||| ||||| || || |||||||| | ||||  | | |  ||||    
T  24992699 ccgtatgaactctggaaagaaagaaagccagacatttcttattttcatatttttggatgctattgttatattttaaacaacaaagataacctagaaaaat 24992798  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||||||||||||||| ||||||    
T  24992799 ttgattcaaagtcagacaaagctatattt 24992827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 1794546 - 1794693
Alignment:
Q  18 aaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccccgtatgaactctggaa 117  Q
    ||||||| ||||| || |||| |||||| ||| ||||||||||  ||||  | |  || ||||||||| |||||||||||||||| ||||||||||||||    
T  1794546 aaaaatacttttgggctgaagccataaatacctcttgctatattataaatcgtgtctctattagaaaaattttaaacaaaaccccatatgaactctggaa 1794645  T
Q  118 aggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    |   | ||| |||||||| || |||||||| || ||||| ||||||||    
T  1794646 aaataaaaaaccaaacatctcttattttcacatttttggttgttattg 1794693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 13945443 - 13945534
Alignment:
Q  91 aaacaaaaccccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaata 182  Q
    |||||||| | |||||||||| || |||  |||||||||||||||||||||||||| ||| |||  ||||||||| ||||| ||||||||||    
T  13945443 aaacaaaatcacgtatgaactatgaaaaaaaagaaagccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaata 13945534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 182
Target Start/End: Original strand, 14086632 - 14086723
Alignment:
Q  91 aaacaaaaccccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaata 182  Q
    |||||||| | |||||||||| || |||  |||||||||||||||||||||||||| ||| |||  ||||||||| ||||| ||||||||||    
T  14086632 aaacaaaatcacgtatgaactatgaaaaaaaagaaagccaaacatttcatattttcgtatctttcaatgttattgttacattttaaacaata 14086723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 27166374 - 27166204
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| || | |||||||| ||||||| ||| |||||  ||||||| ||  | || |||| |||||| ||||| ||| | || ||||||    
T  27166374 aaatgaatcaaatgttgaagattatttttgggcagaagccattaacacatcttgctacattttgaatagagtttcaataagaaaggttcttaataaaacc 27166275  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacat 171  Q
    || |||||||||||||||   |  || || | ||| || |||||||| ||||||||||| |||||||||||    
T  27166274 ccatatgaactctggaaaaatatcaaacctagcatatcttattttcacatatttggatgctattgctacat 27166204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 9510158 - 9510041
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  9510158 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 9510059  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  9510058 ccatatgaactctggaaa 9510041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 18655165 - 18655282
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  18655165 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 18655264  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  18655265 ccatatgaactctggaaa 18655282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 45018297 - 45018414
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  45018297 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 45018396  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  45018397 ccatatgaactctggaaa 45018414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 9489 - 9717
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| | ||||||||||| ||||||| |||||| ||  ||||||| ||   ||| |||| || ||| |||||||||||||| ||||||    
T  9489 aaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatcttgctacatttaaaatagagtttaaataagaaaagttttaaataaaacc 9588  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    |||||| |||||||||||  |||||||||||||||||| ||||||||||| ||||||||  |||| || || |||||||| | ||||  | | || ||||    
T  9589 ccgtatcaactctggaaaaaaagaaagccaaacatttcttattttcatatttttggatgcaattgttatattttaaacaacaaagataacctaggaaaat 9688  T
Q  201 ttgactcaaagtcagacaaagcaatattt 229  Q
    |||| ||||||||||||||||| ||||||    
T  9689 ttgattcaaagtcagacaaagctatattt 9717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 260416 - 260652
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||||||| ||||||||||||| || |||| ||| ||||   ||||||||||| |||| |||| ||||||||||||| || | ||||||||||    
T  260416 aatgaatcaaacgttgaaaaatatttttgggctgaagccatcaacatatcttgctatatcataaatagagtttcaattagaaaaattctcaacaaaaccc 260515  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||||||||| |||||  ||| |||   ||| || |||||    
T  260516 catatgaactctggaaaaacagaaaaccaaacatttcttattttcacatctttggctgtttttgctacattttaaatgataaagaaaacttaggaaaatt 260615  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||||||||| |||||||||| ||| || || ||||||    
T  260616 tgactcaaaatcagacaaaggaattttcttaggatat 260652  T

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Target: scaffold0028 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 100732 - 100568
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||  ||||||| ||||| || |||| |||||| ||  ||||||||||| ||||||| | ||||||||||||| ||||||||||||||    
T  100732 aaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacttcttgctatatcataaacagggtttcaattagaaaaattttaaacaaaacc 100633  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattg 165  Q
    || || ||||||||||||   | ||| || ||||| |||||||||||||| ||||||||||||||    
T  100632 ccatacgaactctggaaaaatataaaacctaacatctcatattttcatatttttggatgttattg 100568  T

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Target: scaffold0028; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 229
Target Start/End: Original strand, 85425 - 85554
Alignment:
Q  100 cccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaa 199  Q
    |||||||||||||| ||||| |||||||||||||||||| || |||||||| |||||||| ||||| || || |||||||| | |||   | | |  |||    
T  85425 cccgtatgaactctcgaaagaaagaaagccaaacatttcttaatttcatatttttggatgctattgttatattttaaacaacaaagagaacctagaaaaa 85524  T
Q  200 tttgactcaaagtcagacaaagcaatattt 229  Q
    ||||| ||||||||||||||||| ||||||    
T  85525 tttgattcaaagtcagacaaagctatattt 85554  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 14278489 - 14278253
Alignment:
Q  2 aatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaaccc 101  Q
    ||||||||||| ||| ||||||||||||| || ||||  || |||||  ||||||||||  ||||  ||| |||||| |||||| || | ||||||||||    
T  14278489 aatgaatcaaatgttgaaaaatatttttgggctgaagctattaacacttcttgctatattataaatcgagtttcaatcagaaaaattctcaacaaaaccc 14278390  T
Q  102 cgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaatt 201  Q
    | |||||||||||||||   ||||| ||||||||||| |||||||| || ||||| |||| ||| || || |||||  ||| |||   | | || |||||    
T  14278389 cctatgaactctggaaaaacagaaaaccaaacatttcttattttcacatttttggttgtttttgttatattttaaatgataaagaaaacctaggtaaatt 14278290  T
Q  202 tgactcaaagtcagacaaagcaatatttttgggatat 238  Q
    ||| ||||| ||||| |||| ||| ||||| ||||||    
T  14278289 tgattcaaaatcagataaaggaatctttttaggatat 14278253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 20174891 - 20175115
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| ||||||||||||| || ||||  ||||||||  ||||||||||  | ||  | | | | || |||||  || |||||||||||    
T  20174891 aaatgaatcaaatgttgaaaaatatttttgggctgaagcaataaacacatcttgctatatactgaatcgtgttactatcagaaattttctaaacaaaacc 20174990  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacatcttaaacaatagagattccttggggaaat 200  Q
    || ||||||||||||||    || || || |||||| |||| |||||||| |||||||||||||| ||||| || ||||| | ||||    || | || |    
T  20174991 ccatatgaactctggaagaataggaaacctaacattgcatactttcatatctttggatgttattgttacattttgaacaacaaagataatctgagtaagt 20175090  T
Q  201 ttgactcaaagtcagacaaagcaat 225  Q
    ||||||| |||||||||||||||||    
T  20175091 ttgactctaagtcagacaaagcaat 20175115  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 16158830 - 16158947
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  16158830 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 16158929  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  16158930 ccatatgaactctggaaa 16158947  T

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Target: scaffold0163 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 19446 - 19616
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| ||||||||||||| || ||||  || |||||  ||||||||||| | ||  | | | | || |||||  || |||||||||||    
T  19446 aaatgaatcaaatgttgaaaaatatttttgggctgaagcaattaacacatcttgctatatcctgaatcgtgttactatcagaaactttctaaacaaaacc 19545  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacat 171  Q
    || |||||||| ||||||   || || || | |||| |||| |||||||| |||||||||||||| |||||    
T  19546 ccatatgaactttggaaaaataggaaacctaccattgcatactttcatatctttggatgttattgttacat 19616  T

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Target: scaffold0313 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 13504 - 13674
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| || | |||||||| ||||||| ||| |||||  |||| || ||  | || |||| |||||| ||||| ||| | || ||||||    
T  13504 aaatgaatcaaatgttgaagattatttttgggcagaagccattaacacatcttgttacattttgaatagagtttcaataagaaaggttctcaataaaacc 13603  T
Q  101 ccgtatgaactctggaaaggaagaaagccaaacatttcatattttcatatatttggatgttattgctacat 171  Q
    || |||||||||||||||   |  || || | ||| || |||||||| |||||||| || |||||||||||    
T  13604 ccatatgaactctggaaaaatatcaaacctagcatatcttattttcacatatttggctgctattgctacat 13674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 14373 - 14256
Alignment:
Q  1 aaatgaatcaaacgttaaaaaatatttttgtgcagaagtcataaacaccgcttgctatatcgtaaacagaggttcaattagaaaagttttaaacaaaacc 100  Q
    |||||||||||| ||| |||| || ||||| ||||||| ||| |||||  |||| || ||  | || |||| ||| || ||||| ||| | |||||||||    
T  14373 aaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacc 14274  T
Q  101 ccgtatgaactctggaaa 118  Q
    || |||||||||||||||    
T  14273 ccatatgaactctggaaa 14256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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