View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_287 (Length: 250)
Name: NF7829A_low_287
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_287 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 48999269 - 48999035
Alignment:
| Q |
16 |
tggacatcaatgaataggaaattgattaatctctaaagatttgtgagattgttagaatgagtattgtgtacatttttaactaaaagttctttcaaaatct |
115 |
Q |
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| T |
48999269 |
tggacatcaatgaaaaggaaattgatcaatctcaaaaaaaatttgagattgttagaatgagtattgtgtacatttttaactaaaaagtctttcaaaatct |
48999170 |
T |
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| Q |
116 |
actctataaaagaatccatcacaatctataaaccaaaggagactatacaagttgtgagaaatttcaattgaatatcaatggatttcgttgattgaattat |
215 |
Q |
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| T |
48999169 |
actctataaaagaatccatcacaatctataaaccaaaggagactatacaagttgtgagaaatttcaattgaatatcaatggatttcgttgattgaattat |
48999070 |
T |
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| Q |
216 |
ttatcacaagattaaaattgtttaaaaacaaatag |
250 |
Q |
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| T |
48999069 |
ttatcacaagattaaaattgtttaaagacaaatag |
48999035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Complemental strand, 3634505 - 3634421
Alignment:
| Q |
58 |
gtgagattgttagaatgagtattgtgt--acatttttaactaaaagttctttcaaaatctactctataaaagaatccatcacaatc |
141 |
Q |
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| T |
3634505 |
gtgagattgtt-gaatgaggaatgtgttcacatttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatc |
3634421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 28100362 - 28100452
Alignment:
| Q |
55 |
tttgtgagattgttagaatgagtattgtgt--acatttttaactaaaagttctttcaaaatctactctataaaagaatccatcacaatctat |
144 |
Q |
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| T |
28100362 |
tttgtgagattgtt-gaatgagtagtgtgttcacatttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatctat |
28100452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 204
Target Start/End: Original strand, 28100482 - 28100522
Alignment:
| Q |
164 |
aagttgtgagaaatttcaattgaatatcaatggatttcgtt |
204 |
Q |
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| T |
28100482 |
aagttgtgagaaatcttaattgaatatcaacggatttcgtt |
28100522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 145
Target Start/End: Complemental strand, 27198575 - 27198484
Alignment:
| Q |
55 |
tttgtgagattgttagaatgagtattgtgtacat--ttttaactaaaagttctttcaaaatctactctataaaagaatccatcacaatctata |
145 |
Q |
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| T |
27198575 |
tttgtgagattgtt-gaatgagtattttgttcatatttttaactaagaagtctcacaaaatcaactctataaaagaatccattaaaatctata |
27198484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 42658018 - 42657930
Alignment:
| Q |
55 |
tttgtgagattgttagaatgagtattgtgt--acatttttaactaaaagttctttcaaaatctactctataaaagaatccatcacaatct |
142 |
Q |
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| T |
42658018 |
tttgtgagattgtt-gaatgagtattgtgttcacatttttaactaaaaagtctcataaaatccattccatagaagaatccatcaaaatct |
42657930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 11580 - 11664
Alignment:
| Q |
58 |
gtgagattgttagaatgagtattgtgt--acatttttaactaaaagttctttcaaaatctactctataaaagaatccatcacaatc |
141 |
Q |
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| T |
11580 |
gtgagattgtt-gaatgaggaatgtgttcacatttttaactaaaaagtctctcaaaatccattccataaaagaatccatcaaaatc |
11664 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 46749434 - 46749393
Alignment:
| Q |
164 |
aagttgtgagaaatttcaattgaatatcaatggatttcgttg |
205 |
Q |
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| T |
46749434 |
aagttgtgagaaatcttaattgaatatcaacggatttcgttg |
46749393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 11007021 - 11007067
Alignment:
| Q |
55 |
tttgtgagattgttagaatgagtattgtgt--acatttttaactaaaa |
100 |
Q |
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| T |
11007021 |
tttgtgagattgtt-gaatgagtattgtgttcacatttttaactaaaa |
11007067 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 27786507 - 27786417
Alignment:
| Q |
55 |
tttgtgagattgttagaatgagtattgtgt--acatttttaactaaaagttctttcaaaatctactctataaaagaatccatcacaatctat |
144 |
Q |
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| T |
27786507 |
tttgtgagattgtt-gaatgagcattttgttcacatttttaactaaaaagtctcacaaaatccattccataaaagaatccattaaaatctat |
27786417 |
T |
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