View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_29 (Length: 448)
Name: NF7829A_low_29
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 161 - 446
Target Start/End: Original strand, 34444044 - 34444329
Alignment:
| Q |
161 |
ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg |
260 |
Q |
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| T |
34444044 |
ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg |
34444143 |
T |
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| Q |
261 |
ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa |
360 |
Q |
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| T |
34444144 |
ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa |
34444243 |
T |
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| Q |
361 |
attgatgttagtggagatggctataaagcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgatagtatgga |
446 |
Q |
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| T |
34444244 |
attgatgttagtggagatggctataaagcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgttagtttgga |
34444329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 161 - 448
Target Start/End: Original strand, 34437297 - 34437584
Alignment:
| Q |
161 |
ttatctccgcgttggaacttagaccagttgatagttctatttataaaactgagttcggtgattctgcttcattgttacttttcaaaagatgggacattgg |
260 |
Q |
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||||||| || ||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34437297 |
ttatctcagcattggaacttagaccaattgataactctatttataaaactgagtttggtgattctgcttcattgttacttttcaaaagatgggacattgg |
34437396 |
T |
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| Q |
261 |
ttcatttaatggaagtggtagatatcaagacgatgtttacgatagaatttggtttcctttgaattcctcttcatggaaatctataaacacttcttcaaaa |
360 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | || |||||||||||||||||||||| ||||||||||||| |
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| T |
34437397 |
ttcatttaatggaagtggtagatatcaagatgatgtttatgatagaatttggtttcctcttaaatcctcttcatggaaatctataagcacttcttcaaaa |
34437496 |
T |
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| Q |
361 |
attgatgttagtggagatggctataaagcaccgtttgaagttattagcaatgctgctacaccaaggaatgagaatgatagtatggaat |
448 |
Q |
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|| |||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
34437497 |
atagatgttagtggagatggctataaaccaccatttgaagttattaggaatgctgctacaccaaggaatgagaatgatagtttggaat |
34437584 |
T |
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