View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_3 (Length: 650)

Name: NF7829A_low_3
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_3
NF7829A_low_3
[»] chr1 (9 HSPs)
chr1 (22-497)||(17700923-17701395)
chr1 (22-497)||(17662684-17663156)
chr1 (506-650)||(13867963-13868107)
chr1 (22-201)||(21899949-21900125)
chr1 (556-650)||(33150843-33150937)
chr1 (441-490)||(22667771-22667820)
chr1 (565-647)||(26510564-26510646)
chr1 (389-449)||(22667050-22667110)
chr1 (80-140)||(38227577-38227637)
[»] chr7 (2 HSPs)
chr7 (506-650)||(35213481-35213625)
chr7 (580-648)||(26855563-26855631)
[»] chr4 (2 HSPs)
chr4 (506-650)||(43516878-43517022)
chr4 (556-650)||(20543933-20544027)
[»] chr3 (2 HSPs)
chr3 (511-650)||(40513859-40513998)
chr3 (521-650)||(34829267-34829396)
[»] chr2 (3 HSPs)
chr2 (556-635)||(32624217-32624296)
chr2 (507-650)||(11196199-11196342)
chr2 (580-635)||(144246-144301)
[»] chr5 (1 HSPs)
chr5 (565-650)||(21368125-21368210)
[»] chr6 (1 HSPs)
chr6 (580-635)||(14687230-14687285)


Alignment Details
Target: chr1 (Bit Score: 422; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 22 - 497
Target Start/End: Original strand, 17700923 - 17701395
Alignment:
Q  22 agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggatgaaaatacc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17700923 agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggataaaaatacc 17701022  T
Q  122 ttgttacaaacatcacatgtatggttcttcggtttcccatcatcatcatgatcatggttgtgaagagaagaagaaaaaacacaactaatttttgtagtct 221  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  17701023 ttgttacaaacatcacatgtatggttcttcggtttcccatc---atcatgatcatggttgtgaagagaagaagaaaaaacacaagtaatttttatagtct 17701119  T
Q  222 tcttcaaggtgccgccattattcacatcatgatcgtggatctgtttgtttgtttcaggttgaacaagaatcttagagaagcggtgaatggttttgtggcc 321  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  17701120 tcttcaaggtgccgccgttattcacatcatgatcatggatctgtttgtttgtttcaggttgaacaagaatcttcgaggagcggtgaatggttttgtggcc 17701219  T
Q  322 accaagtgatttactagaggtgaatgttttgtgacagaactcacaactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga 421  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17701220 accaagtgatttactagaggtgaatgttttgtgacaaaactcacaactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga 17701319  T
Q  422 tcataatcatggctgtttttgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttcatgatgt 497  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17701320 tcatgatcatggctgtttttgggtttatcaaacgaatggtgagaagaaggtgaagaatagtgtttgttcatgatgt 17701395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 22 - 497
Target Start/End: Complemental strand, 17663156 - 17662684
Alignment:
Q  22 agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggatgaaaatacc 121  Q
    |||| |||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17663156 agatggggcagtcagtgagggaataatagtatccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcagtgttggatgaaaatacc 17663057  T
Q  122 ttgttacaaacatcacatgtatggttcttcggtttcccatcatcatcatgatcatggttgtgaagagaagaagaaaaaacacaactaatttttgtagtct 221  Q
    |||| ||||||||||| |||||||||||||||||||| ||||||||   ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17663056 ttgtgacaaacatcacttgtatggttcttcggtttccaatcatcat---gatcatggttgtgaagagaagaagaaaaaacacaagtaatttttgtagtct 17662960  T
Q  222 tcttcaaggtgccgccattattcacatcatgatcgtggatctgtttgtttgtttcaggttgaacaagaatcttagagaagcggtgaatggttttgtggcc 321  Q
    |||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17662959 tcttcaaggtgccgccgttattcacatcatgatcacggatctgtttgtttgtttcaggttgaacaagaatcttagaggagcggtgaatggttttgtggcc 17662860  T
Q  322 accaagtgatttactagaggtgaatgttttgtgacagaactcacaactgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga 421  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17662859 accaagtgatttactagaggtgaatgttttgtgacaaaactcacaattgtagattcttgaacctgggtttttcttatcattttcaagagattgttggtga 17662760  T
Q  422 tcataatcatggctgtttttgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttcatgatgt 497  Q
    |||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||    
T  17662759 tcatgatcatggctgtttttgggtttatgaaacgaatggtgagaagaaggtgaagaatagggtttgttcatgatgt 17662684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 506 - 650
Target Start/End: Original strand, 13867963 - 13868107
Alignment:
Q  506 ttggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgt 605  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  13867963 ttggcgaggcagcattgtgtgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgt 13868062  T
Q  606 caggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  13868063 caggtgttggattggaatgtcaggtgctgatccccttaatattga 13868107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 21899949 - 21900125
Alignment:
Q  22 agattgggcagtcggtgagtgaataatagtacccttcttcaaaccctttggagtatgccatctcatatgtcccttcaaagcattgttggatgaaaatacc 121  Q
    |||| |||||||||||| |||  |||||  ||| |||||| |||||||| ||||||||||||||||||| || ||||||||||||||||| ||||| |||    
T  21899949 agatggggcagtcggtgggtggttaataacaccattcttcgaacccttttgagtatgccatctcatatgcccgttcaaagcattgttggacgaaaaaacc 21900048  T
Q  122 ttgttacaaacatcacatgtatggttcttcggtttcccatcatcatcatgatcatggttgtgaagagaagaagaaaaaac 201  Q
    |||||||||||||||||||||||||||||| ||||||    ||||||||||| ||| |||||||||||||||||||||||    
T  21900049 ttgttacaaacatcacatgtatggttcttcagtttcc---aatcatcatgattatgattgtgaagagaagaagaaaaaac 21900125  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 556 - 650
Target Start/End: Complemental strand, 33150937 - 33150843
Alignment:
Q  556 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    |||||||||||||| || || || ||||||||  | ||||||||| || |||||| |||||| |||||||||||||| || ||||||||||||||    
T  33150937 tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattga 33150843  T

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Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 441 - 490
Target Start/End: Original strand, 22667771 - 22667820
Alignment:
Q  441 tgggtttatcaaaggaatggtgagaagaaggtgaagaatagtgtttgttc 490  Q
    ||||||||||||| ||||  ||||||||||||||||||||||||||||||    
T  22667771 tgggtttatcaaacgaataatgagaagaaggtgaagaatagtgtttgttc 22667820  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 647
Target Start/End: Original strand, 26510564 - 26510646
Alignment:
Q  565 tttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatat 647  Q
    ||||| |||||||| | ||| ||||| |||||||||  | |||||| |||||| ||||||||||||| ||| ||| |||||||    
T  26510564 tttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtcaggtgttgacccctttaatat 26510646  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 389 - 449
Target Start/End: Original strand, 22667050 - 22667110
Alignment:
Q  389 tttttcttatcattttcaagagattgttggtgatcataatcatggctgtttttgggtttat 449  Q
    |||||| ||||| |||||||||  | ||||||||| | |||||||||||| ||||||||||    
T  22667050 tttttcatatcagtttcaagagtctcttggtgatcttgatcatggctgttgttgggtttat 22667110  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 38227577 - 38227637
Alignment:
Q  80 catctcatatgtcccttcaaagcattgttggatgaaaataccttgttacaaacatcacatg 140  Q
    |||||||||||||| ||||| || ||||| || | ||| |||||||| |||||||||||||    
T  38227577 catctcatatgtccattcaatgctttgttagaagtaaaaaccttgttgcaaacatcacatg 38227637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 1e-61; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 506 - 650
Target Start/End: Complemental strand, 35213625 - 35213481
Alignment:
Q  506 ttggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgt 605  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||    
T  35213625 ttggcgaggcagcattgtgtgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgt 35213526  T
Q  606 caggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  35213525 caggtgttggattggaatgtcaggtgttgatccccttaatattga 35213481  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 580 - 648
Target Start/End: Complemental strand, 26855631 - 26855563
Alignment:
Q  580 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatatt 648  Q
    ||||||||| ||||||||||| || |||||| || ||| ||||||||||||||||| ||  ||||||||    
T  26855631 acttttggttctttgtggcatcttatcaggtctttgatcggaatgtcaggtgctgacccttttaatatt 26855563  T

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Target: chr4 (Bit Score: 117; Significance: 3e-59; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 506 - 650
Target Start/End: Original strand, 43516878 - 43517022
Alignment:
Q  506 ttggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgt 605  Q
    ||||||||| ||||||||||||||||||||| |||||| |  ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  43516878 ttggcgaggtagcattgtgtgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttat 43516977  T
Q  606 caggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  43516978 caggtgttggattggaatgtcaggtgctgatccccttaatattga 43517022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 556 - 650
Target Start/End: Complemental strand, 20544027 - 20543933
Alignment:
Q  556 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||||| ||||||||||||||||| ||| ||||||||||    
T  20544027 tctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcaggtgctgacccctttaatattga 20543933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 7e-54; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 511 - 650
Target Start/End: Original strand, 40513859 - 40513998
Alignment:
Q  511 gaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggt 610  Q
    |||||||||||||||||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  40513859 gaggcagcattgtgtgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggt 40513958  T
Q  611 gttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  40513959 gttggattggaatgtcatgtgctgatccccttaatattga 40513998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 521 - 650
Target Start/End: Complemental strand, 34829396 - 34829267
Alignment:
Q  521 tgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattgg 620  Q
    |||||||||| ||||| |||| ||  |||||||   |||| || ||||| |||||||| |||||  |||| |||||||||  | |||||| |||||| ||    
T  34829396 tgtgtgttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcgg 34829297  T
Q  621 aatgtcaggtgctgatccccttaatattga 650  Q
    ||||||||||| | | ||| ||||||||||    
T  34829296 aatgtcaggtgttaacccctttaatattga 34829267  T

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Target: chr2 (Bit Score: 48; Significance: 4e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 556 - 635
Target Start/End: Complemental strand, 32624296 - 32624217
Alignment:
Q  556 tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 635  Q
    |||||||||||||| ||||| || ||||||||| | ||||||||| || |||||| ||||||||||||||||||||||||    
T  32624296 tctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattggaatgtcaggtgctga 32624217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 507 - 650
Target Start/End: Complemental strand, 11196342 - 11196199
Alignment:
Q  507 tggcgaggcagcattgtgtgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtc 606  Q
    |||||||||||   |||||||||| ||||| || ||||| |||  ||  |||||||||||||| || || || ||||||||| | ||||||||| || ||    
T  11196342 tggcgaggcagttatgtgtgttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatc 11196243  T
Q  607 aggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    |||| ||||||  ||||||||||||  || | ||||||||||||    
T  11196242 aggtcttggatcagaatgtcaggtgtcgacctccttaatattga 11196199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 580 - 635
Target Start/End: Original strand, 144246 - 144301
Alignment:
Q  580 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 635  Q
    ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
T  144246 acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 144301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 565 - 650
Target Start/End: Original strand, 21368125 - 21368210
Alignment:
Q  565 tttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattga 650  Q
    ||||| ||||| || ||||||||| | ||||||||| || |||||| |||||| ||||||||||||||||| || |||||||||||    
T  21368125 tttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtcaggtgctgaccctcttaatattga 21368210  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 580 - 635
Target Start/End: Original strand, 14687230 - 14687285
Alignment:
Q  580 acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga 635  Q
    ||||||||| ||||||||||| || |||||| |||||| |||||||||||||||||    
T  14687230 acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga 14687285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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