View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_304 (Length: 249)
Name: NF7829A_low_304
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_304 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 249
Target Start/End: Original strand, 18339394 - 18339633
Alignment:
| Q |
10 |
aattctaattggtcaataaaaatggatttgaatgcaatttcnnnnnnnnnnnncctaagtttatccttaagcaatctatcatgaaaagtaaaaaggggta |
109 |
Q |
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| T |
18339394 |
aattctaattggtcaataaaaatggatttcaatgcaatttcttttttatttttccttagtttatccttaagcaatctatcatgaaaagtaaaaaggggta |
18339493 |
T |
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| Q |
110 |
aagtaactttgtgttgattgttttcaaaatttaagttttcttcttctgcatgtaaaaaaggaataaataaatcaatcaaattccgggaggcttcataaag |
209 |
Q |
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| T |
18339494 |
aagtaactttgtgttgattgttttcaaaatttaagttttcttcttctgcatgtaaaaaaggaataaataaatcaatcaaattccgggaggcttcataaag |
18339593 |
T |
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| Q |
210 |
tgcttctttaggagttaaacttccatttgtccatatttcg |
249 |
Q |
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| T |
18339594 |
tgcttctttaggagttaaacttccatttgtccatatttcg |
18339633 |
T |
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Target: scaffold0002 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 274868 - 274956
Alignment:
| Q |
160 |
tgtaaaaaaggaataaataaatcaatcaaattccgggaggcttcataaagtgcttctttaggagttaaacttccatttgtccatatttc |
248 |
Q |
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| T |
274868 |
tgtagaaaaggaagaaataaatcaatcaaattacgagaagcctcataaagcgcttccttaggggttaaacttccattagtccatatttc |
274956 |
T |
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