View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_308 (Length: 249)
Name: NF7829A_low_308
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_308 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 13 - 249
Target Start/End: Complemental strand, 37552453 - 37552217
Alignment:
| Q |
13 |
tggacatcagtgtaaaacatttttgcactttcagtgcttacaattaaattaaattactcattgaataccacacgatgtctctttgccttaatgaaatgtt |
112 |
Q |
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| T |
37552453 |
tggacatcagtgtaaaacatttttgcactttcagtgcttacaattaaattaaattactcattgaataccacacgatgtctctttgccttaatgaaatgtt |
37552354 |
T |
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| Q |
113 |
tactgtattatactaatgaagacaagccattttctgaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatt |
212 |
Q |
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| T |
37552353 |
tactgtattatactaatgaagacaagccattttctgaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatt |
37552254 |
T |
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| Q |
213 |
tgcacatacttctccttgttcaaaattggaaggctga |
249 |
Q |
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| T |
37552253 |
tgcacatacttctccttgttcaaaattggaaggctga |
37552217 |
T |
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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 243
Target Start/End: Complemental strand, 39363433 - 39363338
Alignment:
| Q |
148 |
gaatcacatatcttcaatttcttgcttaggcttttgcttttgttccactcatgtacatgtgcatttgcacatacttctccttgttcaaaattggaa |
243 |
Q |
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| T |
39363433 |
gaatcacttaccttcaatttcttgtacaggcatttgcttttgttccactcatgtacatgtgcatctgtacatactactctttgttcaaaatcggaa |
39363338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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