View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_309 (Length: 249)
Name: NF7829A_low_309
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_309 |
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| [»] chr4 (7 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 5195424 - 5195644
Alignment:
| Q |
29 |
gacatagttaattattacaggactatgcagtttggagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagc |
128 |
Q |
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||||||||||||||| ||||||||||||| ||| ||| ||||||||||||||| |||||||| ||||||||| |||||||||||| || ||||||||| |
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| T |
5195424 |
gacatagttaattatgacaggactatgcaattttaaggatttggtagaactggatatcagcaaaaacatgtttagtgctaaacttccagattgtttaagc |
5195523 |
T |
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| Q |
129 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatctcacatccctggcatacttatcct |
228 |
Q |
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|||||||||||||||||||||||||| ||| | ||||||||||||| ||||||||||||||| |||| || |||||||||||| |||||||||||||||| |
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| T |
5195524 |
aacttaacaaacctcagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatcactggcatacttatcct |
5195623 |
T |
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| Q |
229 |
tctttggaaattacatgcaag |
249 |
Q |
| |
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||| ||||||||||||||||| |
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| T |
5195624 |
tctatggaaattacatgcaag |
5195644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 5159789 - 5160002
Alignment:
| Q |
36 |
ttaattattacaggactatgcagtttggagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagcaacttaa |
135 |
Q |
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|||||||| ||||||||||||| |||| ||| ||||||||||||||| |||||| | ||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
5159789 |
ttaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagccagaacatgtttagtgctaaatttcctgagtgtttaagcaacttaa |
5159888 |
T |
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| Q |
136 |
caaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatctcacatccctggcatacttatccttctttgg |
235 |
Q |
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| T |
5159889 |
caaacctcagagttcttgaacttagtaataatctgttcagtggaaagtttccatctttcattagcaatctcacatcactggcatacttatccttctatgg |
5159988 |
T |
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| Q |
236 |
aaattacatgcaag |
249 |
Q |
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|||||||||||||| |
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| T |
5159989 |
aaattacatgcaag |
5160002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 36 - 249
Target Start/End: Original strand, 5182037 - 5182250
Alignment:
| Q |
36 |
ttaattattacaggactatgcagtttggagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagcaacttaa |
135 |
Q |
| |
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|||||||| ||||||||||||| |||| ||| |||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
5182037 |
ttaattatgacaggactatgcaatttgaaggatttggtagaattggatatcagctataacatgtttagtgctaaacttccagagtgtttaagcaacttaa |
5182136 |
T |
|
| Q |
136 |
caaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatctcacatccctggcatacttatccttctttgg |
235 |
Q |
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||||||| ||||||||||| ||| | ||||||||||||| ||||||||||||||| |||| || |||||||||||| ||||||||||||||||||| ||| |
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| T |
5182137 |
caaaccttagagttcttgaacttagtaataatctgttcagtggaaattttccatctttcattagcaatctcacatcactggcatacttatccttctatgg |
5182236 |
T |
|
| Q |
236 |
aaattacatgcaag |
249 |
Q |
| |
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|||||||||||||| |
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| T |
5182237 |
aaattacatgcaag |
5182250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 29 - 249
Target Start/End: Complemental strand, 4842827 - 4842607
Alignment:
| Q |
29 |
gacatagttaattattacaggactatgcagtttggagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagc |
128 |
Q |
| |
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||||||||||||||| ||||||||||||| |||| ||| ||||| ||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
4842827 |
gacatagttaattatgacaggactatgcaatttgaaggatttggaagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagt |
4842728 |
T |
|
| Q |
129 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatctcacatccctggcatacttatcct |
228 |
Q |
| |
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|||||||||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| |||||| |
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| T |
4842727 |
aacttaacaaacctcagaattcttgaccttagccataatctgttcggtggaaattttccatccttcactaccaatctcacatccttgacattcttatcac |
4842628 |
T |
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| Q |
229 |
tctttggaaattacatgcaag |
249 |
Q |
| |
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||| || |||||||||||||| |
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| T |
4842627 |
tctatgaaaattacatgcaag |
4842607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 29 - 249
Target Start/End: Original strand, 5172698 - 5172918
Alignment:
| Q |
29 |
gacatagttaattattacaggactatgcagtttggagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagc |
128 |
Q |
| |
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||||||||||||||| ||||||||||||| |||| ||| ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||| |
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| T |
5172698 |
gacatagttaattatgacaggactatgcaatttgaaggatttggtagaactggatatcagcaaaaacatgtttggggctaaacttcctgagtgtttaagt |
5172797 |
T |
|
| Q |
129 |
aacttaacaaacctcagagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatctcacatccctggcatacttatcct |
228 |
Q |
| |
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|||||||||||||||||| ||||||||||| || ||||||| |||| |||||||||||||||||||| || |||||||||||| || ||| |||||| |
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| T |
5172798 |
aacttaacaaacctcagaattcttgaccttagccataatctattcagtggaaattttccatccttcattagtaatctcacatccttgacattcttatcac |
5172897 |
T |
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| Q |
229 |
tctttggaaattacatgcaag |
249 |
Q |
| |
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||| || |||||||||||||| |
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| T |
5172898 |
tctatgaaaattacatgcaag |
5172918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 45 - 249
Target Start/End: Original strand, 5213606 - 5213810
Alignment:
| Q |
45 |
acaggactatgcagtttggagggtttggtagaactggacatcagcaataacatgtttgatgctaaacttcctgagtgtttaagcaacttaacaaacctca |
144 |
Q |
| |
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||||||||||||| ||| ||| ||||||||| || || |||||| ||||||||||| || ||||||| |||||||||||||||||||||||||| | |
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| T |
5213606 |
acaggactatgcaaattgaaggatttggtagagctagatatcagctataacatgtttagcgcgcaacttcccgagtgtttaagcaacttaacaaacctga |
5213705 |
T |
|
| Q |
145 |
gagttcttgaccttggcaataatctgttcactggaaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacat |
244 |
Q |
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|||||||| ||| || ||||| |||||| |||||||||||||||||||| || ||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
5213706 |
atgttcttgaacttagctataatttgttcagtggaaattttccatccttcattagtaatctcacatcactggcatacttatccctctttggaaattacat |
5213805 |
T |
|
| Q |
245 |
gcaag |
249 |
Q |
| |
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||||| |
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| T |
5213806 |
gcaag |
5213810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 249
Target Start/End: Complemental strand, 4857151 - 4857081
Alignment:
| Q |
178 |
gaaattttccatccttcactaccaatctcacatccctggcatacttatccttctttggaaattacatgcaag |
249 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||| ||||| ||| ||||||||||||||||| |
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| T |
4857151 |
gaaattttccatccttcactaccaatctcacatctcttgcatac-tatccatctatggaaattacatgcaag |
4857081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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