View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7829A_low_311 (Length: 249)

Name: NF7829A_low_311
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7829A_low_311
NF7829A_low_311
[»] chr4 (6 HSPs)
chr4 (126-249)||(12088600-12088724)
chr4 (23-128)||(43288003-43288108)
chr4 (18-70)||(43472249-43472301)
chr4 (33-128)||(13010399-13010493)
chr4 (34-101)||(11913948-11914015)
chr4 (53-119)||(31767325-31767390)
[»] chr5 (2 HSPs)
chr5 (126-249)||(36331900-36332024)
chr5 (187-247)||(40351936-40351996)
[»] chr7 (1 HSPs)
chr7 (18-128)||(32352290-32352400)
[»] chr1 (1 HSPs)
chr1 (18-128)||(43254261-43254371)
[»] chr2 (3 HSPs)
chr2 (18-128)||(27107376-27107486)
chr2 (84-130)||(1234941-1234987)
chr2 (92-128)||(8424690-8424726)
[»] scaffold0002 (2 HSPs)
scaffold0002 (126-249)||(420063-420187)
scaffold0002 (166-237)||(215489-215560)
[»] chr3 (2 HSPs)
chr3 (175-237)||(20160231-20160293)
chr3 (33-130)||(9372059-9372156)
[»] chr8 (3 HSPs)
chr8 (33-128)||(22264494-22264588)
chr8 (33-128)||(609804-609898)
chr8 (33-119)||(38678841-38678926)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 12088724 - 12088600
Alignment:
Q  126 atactatgtatgaacaaagtagaatggaggccgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 225  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12088724 atactatgtatgaacatagtagaatggaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 12088625  T
Q  226 cttcccct-ggggtagggtactaca 249  Q
    |||||||| ||||||||||||||||    
T  12088624 cttcccctgggggtagggtactaca 12088600  T

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Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 43288003 - 43288108
Alignment:
Q  23 ccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttattccct 122  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43288003 ccgttaatgacttgtttatttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttattccct 43288102  T
Q  123 taaata 128  Q
    ||||||    
T  43288103 taaata 43288108  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 43472249 - 43472301
Alignment:
Q  18 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcac 70  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  43472249 catcaccgttaatgacttatttgtttatttcaacattaccgacttcgaatcac 43472301  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 13010493 - 13010399
Alignment:
Q  33 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttattcccttaaata 128  Q
    |||||||| ||| |||| | ||||||||||| |||||||||||||||||||||||||| |||||||| |||||| ||| |||||||| ||| ||||    
T  13010493 cttgtttgcttacttcaccgttaccgacttcaaatcaccgcaatttcaagaacagataagtttactt-atatccttctagtttattctctttaata 13010399  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 101
Target Start/End: Complemental strand, 11914015 - 11913948
Alignment:
Q  34 ttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttga 101  Q
    ||||||||||| |||| | ||| ||||||| ||||||| |||||||||||||||||| |||| |||||    
T  11914015 ttgtttgtttacttcatcgttatcgacttcaaatcaccacaatttcaagaacagataagtttccttga 11913948  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 119
Target Start/End: Complemental strand, 31767390 - 31767325
Alignment:
Q  53 ttaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttattc 119  Q
    ||||||| ||| ||| |||||||||||||||| ||||| ||||||||| |||||||||| |||||||    
T  31767390 ttaccgagttcaaattaccgcaatttcaagaa-agataagtttacttgttatccctcttatttattc 31767325  T

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Target: chr5 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 36332024 - 36331900
Alignment:
Q  126 atactatgtatgaacaaagtagaatggaggccgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 225  Q
    |||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36332024 atactatgtatgaacatagtagaattgaggtcgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 36331925  T
Q  226 cttcccct-ggggtagggtactaca 249  Q
    |||||||| ||||||||||||||||    
T  36331924 cttcccctgggggtagggtactaca 36331900  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 187 - 247
Target Start/End: Complemental strand, 40351996 - 40351936
Alignment:
Q  187 ttaggacatctctctttcaaggaggcaacggggattcgacttcccctggggtagggtacta 247  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||    
T  40351996 ttaggacatctctctttcaaggaggcaacggggattcgactcccctgggggtagggtacta 40351936  T

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Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 32352400 - 32352290
Alignment:
Q  18 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttat 117  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  32352400 catcatcgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatatccctcttgtttat 32352301  T
Q  118 tcccttaaata 128  Q
    || ||||||||    
T  32352300 tcgcttaaata 32352290  T

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Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 43254261 - 43254371
Alignment:
Q  18 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||    
T  43254261 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccacaatttcaagaacagataagtttatttgatatccctcttgtttat 43254360  T
Q  118 tcccttaaata 128  Q
    |||||||||||    
T  43254361 tcccttaaata 43254371  T

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Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 128
Target Start/End: Original strand, 27107376 - 27107486
Alignment:
Q  18 catcaccgttaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttat 117  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||    
T  27107376 catcaccattaatgacttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataagtttacttgatattcctcttgattat 27107475  T
Q  118 tcccttaaata 128  Q
    |||||||||||    
T  27107476 tcccttaaata 27107486  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Original strand, 1234941 - 1234987
Alignment:
Q  84 acagataggtttacttgatatccctcttgtttattcccttaaatact 130  Q
    ||||||| |||||||||||||| ||||||||||||| ||| ||||||    
T  1234941 acagataagtttacttgatatctctcttgtttattctctttaatact 1234987  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 128
Target Start/End: Original strand, 8424690 - 8424726
Alignment:
Q  92 gtttacttgatatccctcttgtttattcccttaaata 128  Q
    |||||||||||||||||||||||||||| ||| ||||    
T  8424690 gtttacttgatatccctcttgtttattctcttcaata 8424726  T

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Target: scaffold0002 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 126 - 249
Target Start/End: Complemental strand, 420187 - 420063
Alignment:
Q  126 atactatgtatgaacaaagtagaatggaggccgggcaagtatgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcga 225  Q
    ||||||||||  |||| ||||||||||||| |  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  420187 atactatgtacaaacatagtagaatggaggtcaagcaagtatgcccccatcgtctagtggtttacgacatctctctttcaaggaggcaacggggattcga 420088  T
Q  226 cttcccct-ggggtagggtactaca 249  Q
    |||||||| ||||||||||||||||    
T  420087 cttcccctaggggtagggtactaca 420063  T

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Target: scaffold0002; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 215489 - 215560
Alignment:
Q  166 atgcccccatcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcgacttcccctgggg 237  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  215489 atgcccctatcgtctagtggttcaggacatctctctttcaaggaggcatcggggattcgacttcccctgggg 215560  T

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Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 20160231 - 20160293
Alignment:
Q  175 tcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcgacttcccctgggg 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20160231 tcgtctagtggtttaggacatctctctttcaaggaggcaacggggattcgacttcccctgggg 20160293  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 9372156 - 9372059
Alignment:
Q  33 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaattt-caagaacagataggtttacttgatatccctcttgtttattcccttaaatact 130  Q
    ||||||| |||| |||| | ||||||||||| ||||||| || ||| |||||| ||||| ||||||||| |||||||||||||||||| ||| ||||||    
T  9372156 cttgtttatttacttcaccgttaccgacttcaaatcaccacagttttcaagaa-agataagtttacttgttatccctcttgtttattctctttaatact 9372059  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 128
Target Start/End: Original strand, 22264494 - 22264588
Alignment:
Q  33 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttattcccttaaata 128  Q
    |||||||||||| |||| | ||||| ||||| |||||||||||||||||||||| ||| |||||||| |||||||||| |||||||| ||| ||||    
T  22264494 cttgtttgtttacttcaccgttaccaacttcaaatcaccgcaatttcaagaacaaataagtttactt-atatccctctagtttattctctttaata 22264588  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 609898 - 609804
Alignment:
Q  33 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttattcccttaaata 128  Q
    |||||||||||| |||| ||||||| || || |||||||||||||||||| | ||||| ||||| ||| |||||||||||||||||| ||| ||||    
T  609898 cttgtttgtttacttcaccattaccaacgtcaaatcaccgcaatttcaagga-agataagtttatttgttatccctcttgtttattctctttaata 609804  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 38678841 - 38678926
Alignment:
Q  33 cttgtttgtttatttcaacattaccgacttcgaatcaccgcaatttcaagaacagataggtttacttgatatccctcttgtttattc 119  Q
    |||||||| ||| |||| | ||||||||||| |||||||| |||||| | |||||||| |||||||| |||||||||| ||||||||    
T  38678841 cttgtttgcttacttcaccgttaccgacttcaaatcaccgtaatttccaaaacagataagtttactt-atatccctctagtttattc 38678926  T

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