View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7829A_low_312 (Length: 249)
Name: NF7829A_low_312
Description: NF7829A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7829A_low_312 |
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Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 3775830 - 3775594
Alignment:
| Q |
1 |
gtttagtgaaggatgatggactccgtttggcgagtcggatagagaattctgaacagctgtttcaggtacagttatttggcgaaagtgagaagcagaattc |
100 |
Q |
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| T |
3775830 |
gtttagtgaaggatgatggactccgtttggcgagtcggatagagaattctgaacagctgtttcaggtacagttatttggcgaaagtgagaagcagaattc |
3775731 |
T |
|
| Q |
101 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
200 |
Q |
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| T |
3775730 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
3775631 |
T |
|
| Q |
201 |
cattgtagttattgtagtagcagaatttgatgtccat |
237 |
Q |
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| T |
3775630 |
cattgtagttattgtagtagcagaatttggtgtccat |
3775594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 2823788 - 2823631
Alignment:
| Q |
68 |
acagttatttggcgaaagtgagaagcagaattcttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctct |
167 |
Q |
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| T |
2823788 |
acagttatctggcgatagtgagaagaagagctcttgttttttctacgaccggcacctaccggtacgtttctcatggttccaccggcagtccaatatctct |
2823689 |
T |
|
| Q |
168 |
ggcatttcttgcaaaaatggcgaggttggttaacattgtagttattgtagtagcagaa |
225 |
Q |
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| T |
2823688 |
ggcagttcttgcagaaatgacggggttggttgacattgtaattattatagtagcagaa |
2823631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 98 - 237
Target Start/End: Complemental strand, 31771940 - 31771801
Alignment:
| Q |
98 |
ttcttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggt |
197 |
Q |
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||||||||||| | ||||| || || ||||| ||||||||||| | ||| || |||||||| ||||| || |||||||| |||||||| ||||| |||| |
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| T |
31771940 |
ttcttgttcttgcggcgaccagctccaacaggaacatttctcattgttcctcctgcagtccaatatctttgacatttcttacaaaaatgacgaggctggt |
31771841 |
T |
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| Q |
198 |
taacattgtagttattgtagtagcagaatttgatgtccat |
237 |
Q |
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| T |
31771840 |
tgacattgtaattgttgaagtaacaaaatttggtgtccat |
31771801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 101 - 228
Target Start/End: Complemental strand, 18198314 - 18198187
Alignment:
| Q |
101 |
ttgttcttcctacgaccggcgcctacaggcacatttctcatggctcccccggcagtccagtatctctggcatttcttgcaaaaatggcgaggttggttaa |
200 |
Q |
| |
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|||||||| | |||||| || |||| | ||| ||||||| ||| ||| || | |||||||||||| ||||| || ||||| || || ||||| || || | |
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| T |
18198314 |
ttgttcttgcgacgacctgcccctataagcatatttctcgtggttcctccagaagtccagtatctttggcaatttttgcagaagtgtcgaggctgtttga |
18198215 |
T |
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| Q |
201 |
cattgtagttattgtagtagcagaattt |
228 |
Q |
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| T |
18198214 |
cgttgtagttgttgtagtagcaaaattt |
18198187 |
T |
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